Removing the effects of cell cycle genes data

This data is used for the Galaxy Training Network tutorial 'Removing the effects of cell cycle genes'. It includes lists of cell cycle genes in mice and a dataset that is also used in the GTN tutorial 'Filter, Plot and Explore Single-cell RNA-seq Data'.

The original dataset can be found here: Bacon, Wendi Anne. (2022). AnnData object for case study tutorials [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7053673 The version uploaded here has been processed according to the 'Filter, Plot and Explore Single-cell RNA-seq Data' tutorial up to the point of scaling the data. The data was published in Bacon, W. A., R. S. Hamilton, Z. Yu, J. Kieckbusch, D. Hawkes et al., 2018 Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice. Frontiers in Immunology 9: 10.3389/fimmu.2018.02523

The cell cycle gene lists were obtained from the Harvard Chan School: Bioinformatics Core tinyatlas (2017) cell_cycle/Mus_musculus via GitHub: https://github.com/hbc/tinyatlas/blob/master/cell_cycle/Mus_musculus.csv