Discretized bulk data by the discretization step of rFASTCORMICS used in in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
Authors/Creators
- 1. University of Luxembourg
Description
Bulk data RNAseq data were downloaded from GEO, GTEX, and other sources (see below) and discretized by the discretization step of rFASTCORMICS (Pacheco et al, 2019) used in the optimization step in scFASTCORMICS:
CRC bulk RNAseq data were obtained from Lee et al(2020)
CRC control (NM) was downloaded from GSE81861 (GTEX, Healthy colon from)
Pancreatic Human islet bulk RNAseq data was downloaded from EBI Expression Atlas (Pancreatic islet cells)
Immune cells in pancreatic carcinoma bulk data were obtained from GEO (GSE156278)
liver and breast cancer bulk RNAseq data were obtained from the TCGA (GSE62944)
rFASTCORMICS and tutorial on rFASTCORMICS can be found: https://github.com/sysbiolux
Files
Discretization_Table_Breast_Cancer.txt
Files
(79.3 MB)
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