OME-Zarr hiPSC 3D immunofluorescence images, tiny test set

This dataset is intended to be used for automated testing of OME-Zarr processing.

Example dataset of human induced pluripotent stem cells, imaged at 40x magnification with a Yokogawa CV7000. This is a tiny subset of a larger experiment intended as a test dataset for Fractal: https://github.com/fractal-analytics-platform/fractal

It is a subset of this dataset: https://zenodo.org/record/7057076

1 Channel is included:

- C01: DAPI, nuclear stain

This dataset contains 2 Z levels for 2 field of views for this 1 channel, as well as (manually adjusted) metadata files from the Yokogawa CV7000. The data was acquired in the Pelkmans lab in August 2020.

The images have been processed using Fractal, https://github.com/fractal-analytics-platform/fractal-demos/tree/main/examples/01_cardio_tiny_dataset, version of November 2nd, 2022.Two versions are added here: A 3D version with both Z planes. And a 2D version (MIP of the Z-planes) which also contains label images from cellpose segmentation.