DrugProt Silver Standard Knowledge Graph
Authors/Creators
- 1. Barcelona Supercomputing Center
- 2. TurkuNLP Group, Department of Computing, University of Turku
Description
DrugProt Silver Standard Knowledge Graph
Please cite if you use any DrugProt resource:
Antonio Miranda-Escalada, Farrokh Mehryary, Jouni Luoma, Darryl Estrada-Zavala, Luis Gasco, Sampo Pyysalo, Alfonso Valencia, Martin Krallinger, Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical–protein relations, Database, Volume 2023, 2023, baad080
@article{miranda2023overview, title={Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical--protein relations}, author={Miranda-Escalada, Antonio and Mehryary, Farrokh and Luoma, Jouni and Estrada-Zavala, Darryl and Gasco, Luis and Pyysalo, Sampo and Valencia, Alfonso and Krallinger, Martin}, journal={Database}, volume={2023}, pages={baad080}, year={2023}, publisher={Oxford University Press UK} }
Miranda, Antonio, et al. "Overview of DrugProt BioCreative VII track: quality evaluation and large scale text mining of drug-gene/protein relations." Proceedings of the seventh BioCreative challenge evaluation workshop. 2021.
@inproceedings{miranda2021overview, title={Overview of DrugProt BioCreative VII track: quality evaluation and large scale text mining of drug-gene/protein relations}, author={Miranda, Antonio and Mehryary, Farrokh and Luoma, Jouni and Pyysalo, Sampo and Valencia, Alfonso and Krallinger, Martin}, booktitle={Proceedings of the seventh BioCreative challenge evaluation workshop}, year={2021} }
Description
Files:
- drugprot-silver-standard-kg.zip : JSON files with the relations predicted by the DrugProt systems and their precision
- large_scale_network_abstracts.tsv : PubMed abstracts
- large_scale_network_entities.tsv : CHEMICAL/drug and GENE/protein entities predicted by DrugProt NER Taggers
- large_scale_network_pmids.txt : list of PMIDs
Related resources: