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Published December 31, 2021 | Version v1
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Genome-wide characterization of microsatellites and development of polymorphic markers shared between two weevils of Eucryptorrhynchus (Coleoptera: Curculionidae)

Authors/Creators

  • 1. Beijing Key Laboratory for Forest Pest Control, Beijing Forestry University, Beijing 100083, China & Institute of Plant and Environmental Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China Correspondence authors, E-mails: shujun268@163.com, wenjb@bjfu.edu.cn
  • 2. Institute of Plant and Environmental Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China Correspondence authors, E-mails: shujun268@163.com, wenjb@bjfu.edu.cn
  • 3. Beijing Key Laboratory for Forest Pest Control, Beijing Forestry University, Beijing 100083, China

Description

Zhang, Yujie, Song, Wei, Chen, Jincui, Cao, Lijun, Wen, Junbao, Wei, Shujun (2021): Genome-wide characterization of microsatellites and development of polymorphic markers shared between two weevils of Eucryptorrhynchus (Coleoptera: Curculionidae). Zoological Systematics 46 (4): 273-280, DOI: 10.11865/zs.2021401

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urn:lsid:plazi.org:pub:9E2BA5415A63FFFFFFECE666FFCCFFFA

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Figure: 10.5281/zenodo.7176062 (DOI)
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References

  • Bello, E., Paoletti, M., Webb, S.C., Nascetti, G., Mattiucci, S. 2020. Cross-species utility of microsatellite loci for the genetic characterisation of Anisakis berlandi (Nematoda: Anisakidae). Parasite, 27(9): 1-9.
  • Blacket, M.J., Robin, C., Good, R.T., Lee, D.H., Miller, A.D. 2012. Universal primers for fluorescent labelling of PCR fragments--an efficient and cost-effective approach to genotyping by fluorescence. Molecular Ecology Resources, 12(3): 456-463.
  • Bruford, M.W., Wayne, R.K. 1993. Microsatellites and their application to population genetic studies. Current Opinion in Genetics and Development, 3(6): 939-943.
  • Cao, L.J., Li, Z.M., Wang, Z.H., Zhu, L., Gong, Y.J., Chen, M., Wei, S.J. 2016. Bulk development and stringent selection of microsatellite markers in the western flower thrips Frankliniella occidentalis. Scientific Reports, 6(26512): 1-8.
  • Cao, L.J., Wang, Z.H., Gong, Y.J., Zhu, L., Hoffmann, A.A., Wei, S.J. 2017. Low genetic diversity but strong population structure reflects multiple introductions of western flower thrips (Thysanoptera: Thripidae) into China followed by human- mediated spread. Evolutionary Applications, 10(4): 391-401.
  • Cao, L.J., Wen, J.B., Wei, S.J., Liu, J., Yang, F., Chen, M. 2015. Characterization of novel microsatellite markers for Hyphantria cunea and implications for other Lepidoptera. Bulletin of Entomological Research, 105(03): 273-284.
  • Chapuis, M.P., Estoup, A. 2007. Microsatellite null alleles and estimation of population differentiation. Molecular biology and evolution, 24(3): 621-631.
  • Chatterji, S., Pachter, L. 2006. Reference based annotation with GeneMapper. Genome Biology, 7(4): r29.
  • Chen, Z., Chen, J., Xiang, Z., Hou, Y., Wang, G. 2018. Development of microsatellite markers for the nipa palm hispid beetle, Octodonta nipae (Maulik). The Canadian Journal of Infectious Diseases and Medical Microbiology, 2018(3): 1-5.
  • Du, L.M., Li, Y.Z., Zhang, X.Y., Yue, B.S. 2013. MSDB: a user-friendly program for reporting distribution and building databases of microsatellites from genome sequences. Journal of Heredity, 104(1): 154-157.
  • Earl, D.A., Vonholdt, B.M. 2012. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour, 4(2): 359-361.
  • Gao, Y.F., Ma, L., Cao, L.J., Gong, Y.J., Hoffmann, A.A., Zeng, A.P., Zhou, Z.S., Chen, J.C., Chen, M., Wei, S.J. 2019. Genome-wide developed microsatellite markers for the melon thrips Thrips palmi Karny(Thysanoptera:Thripidae). Zoological Systematics, 44(2): 12-22.
  • Hai, S. 2009. Isolation of microsatellite loci from Perca schrenkii and its universal in related species. Chinese Journal of Zoology, 44(1): 17-23.
  • Jakobsson, M., Rosenberg, N.A. 2007. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23(14): 1801-1806.
  • Ji, Y.C., Gao, P., Zhang, G.Y., Wen, C., Wen, J.B. 2017. Micro-habitat niche differentiation contributing to coexistence of Eucryptorrhynchus scrobiculatus Motschulsky and Eucryptorrhynchus brandti (Harold). Biocontrol Science and Technology, 27(3): 1180-1194.
  • Jwo, B., Whitlock, M.C. 2010. The incomplete natural history of mitochondria. Molecular Ecology, 13(4): 729-744.
  • Kalinowski, S.T. 2005. HP-RARE 1.0: A computer program for performing rarefaction on measures of allelic richness. Molecular Ecology Notes, 5(1): 187-189.
  • Kofler, R., SchlTterer, C., Luschutzky, E., Lelley, T. 2008. Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites. BMC Genomics, 9(612): 1-14.
  • Liu, Z., Tao, J., Luo, Y.Q. 2017. Development and characterization of polymorphic genomic-SSR markers in Asian long-horned beetle (Anoplophora glabripennis). Bulletin of Entomological Research, 107(6): 749-755.
  • Liu, Z.K., Gao, P., Ashraf, M.A., Wen, J.B. 2016. The complete mitochondrial genomes of two weevils, Eucryptorrhynchus chinensis and E. brandt i: conserved genome arrangement in Curculionidae and deficiency of tRNA-Ile gene. Open Life Sciences, 11(1): 458-469.
  • Meglecz, E., Costedoat, C., Dubut, V., Gilles, A., Malausa, T., Pech, N., Martin, J.F. 2010. QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects. Bioinformatics, 26(3): 403-404.
  • Nan, X.N., Wei, C., He, H. 2016. The complete mitogenome of Eucryptorrhynchus brandti (Harold) (Insecta: Coleoptera: Curculionidae). Mitochondrial DNA. Part A, DNA Mapping, Sequencing, and Analysis, 27(3): 2060-2061.
  • Niu, C.W., Zhang, Q.W., Ye, Z.H., Luo, L.Z. 2006. Analysis of genetic diversity in different geographic populations of the beet armyworm Spodoptera exigua( Lepidoptera:Noctuidae ) with AFLP technique. Acta Entomologica Sinica, 49(5): 867-873.
  • Rousset, F. 2008. Genepop'007: a complete re-implementation of the genepop software for Windows and Linux. Molecular Ecology Resources, 8(1): 103-106.
  • Smith, S., Joss, T., Stow, A. 2011. Successful development of microsatellite markers in a challenging species: the horizontal borer Austroplatypus incompertus (Coleoptera: Curculionidae). Bulletin of Entomological Research, 101(05): 551-555.
  • Song, W., Cao, L.J., Wang, Y.Z., Li, B.Y., Wei, S.J. 2017. Novel microsatellite markers for the oriental fruit moth Grapholita molesta (Lepidoptera: Tortricidae) and effects of null alleles on population genetics analyses. Bulletin of entomological research, 107(3): 349-358.
  • Taubert, O., Reinartz, I., Meyerhenke, H., Schug, A. 2019. diSTruct v1.0: generating biomolecular structures from distance constraints. Bioinformatics, 35(24): 5337-5338.
  • Vieira, M.L.C., Santini, L., Diniz, A.L., Munhoz, C.F. 2016. Microsatellite markers: what they mean and why they are so useful. Genet Mol Biol, 39(3): 312-328.
  • Wanke, S., Quandt, D., Neinhuis, C. 2006. Universal primers for a large cryptically simple cpDNA microsatellite region in Aristolochia (Aristolochiaceae). Molecular Ecology Notes, 6(4): 1051-1053.
  • Wu, Z.M., Gao, P., Wen, J.B. 2016. Characteristic analysis of microsatellite in Eucryptorrhynchus chinensis transcriptome. Journal of Environmental Entomology, 38(05): 979-983.
  • Yang, K.L., Wen, J.B. 2021. Developing traps for the overwintering tree-of-heaven weevils Eucryptorrhynchus scrobiculatus and E. brandti (Coleoptera: Curculionidae). Pest Management Science, 77(6): 2766-2772.
  • Yuan, Y., Zhang, L.F., Wu, G.X., Zhu, J.Y. 2014. High- throughput discovery microsatellites in Tomicus yunnanensis(Coleoptera: Scolytinae). Journal of Environmental Entomology, 36(2): 166-170.