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Molecular Phylogeny of the Notomicrine Water Beetles (Coleoptera: Noteridae) Reveals Signatures of Gondwanan Vicariance and Ecological Plasticity
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- 1. Department of Ecology and Evolutionary Biology,
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Baca, Stephen M., Short, Andrew E.Z. (2020): Molecular Phylogeny of the Notomicrine Water Beetles (Coleoptera: Noteridae) Reveals Signatures of Gondwanan Vicariance and Ecological Plasticity. Insect Systematics and Diversity (AIFB) 4 (6), No. 4: 1-11, DOI: 10.1093/isd/ixaa015, URL: http://dx.doi.org/10.1093/isd/ixaa015
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- urn:lsid:plazi.org:pub:3D78FFD3FFF339288F0BFFDF3C51FFDB
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- Taxonomic treatment: http://treatment.plazi.org/id/C14187ABFFF5392F8C39FAF53D9EFEAE (URL)
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- Figure: 10.5281/zenodo.7168174 (DOI)
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References
- Baca, S. M., and A. E. Z. Short. 2018. Notomicrus petrareptans sp. n., a new seep-dwelling species of Noteridae from Suriname (Coleoptera: Adephaga). Zootaxa. 4388(2): 182-190.
- Baca, S. M., and M. Toledo. 2015. Canthysellus Baca and Toledo (Coleoptera: Noteridae: Noterini), a new genus of burrowing water beetle from South America. Coleopt. Bull. 69: 477-488.
- Baca, S. M., A. Alexander, G. T. Gustafson, and A. E. Z. Short. 2017a. Ultraconserved elements show utility in phylogenetic inference of Adephaga (Coleoptera) and suggest paraphyly of 'Hydradephaga'. Syst. Entomol. 42: 786-795.
- Baca, S. M., E. F. A. Toussaint, K. B. Miller, and A. E. Z. Short. 2017b. Molecular phylogeny of the aquatic beetle family Noteridae (Coleoptera: Adephaga) with an emphasis on partitioning strategies. Mol. Phylogenet. Evol. 107: 282-292.
- Balfour-Browne, J. 1939. A contribution to the study of the Dytiscidae-I (Coleoptera, Adephaga). Ann. Mag. Nat. Hist. 3(11): 97-114.
- Belkaceme, T. 1991. Skelet und muskulatur des kopfes und thorax von Noterus laevis Sturm.ein beitrag zur morphologie und phylogenie der Noteridae (Coleoptera: Adephaga). Stuttg. Beitr. Naturkd. A. 462: 1-94.
- Beutel, R. G. 1997. ber Phylogenese und evolution der Coleoptera (Insecta). Abhandlungen des Naturwissenschaftlichen, Goecke & Evers, Vereins in Hamburg, Germany. 31: 1-164.
- Beutel, R. G., M. Balke, and W. E. Steiner. 2006. The systematic position of Meruidae (Coleoptera, Adephaga) and the phylogeny of the smaller aquatic adephagan beetle families. Cladistics. 22: 122-131.
- Beutel, R. G., I. Ribera, M. Fikacek, A. Vasilikopoulos, B. Misof, and M. Balke. 2020. The morphological evolution of the Adephaga (Coleoptera). Syst. Ent. 45(2): 378-395.
- Bouckaert, R., and A. J. Drummond. 2017. bModelTest: Bayesian phylogenetic site model averaging and model comparison. BMC Evol. Bio. 17(1): 42.
- Bouckaert, R., T. Vaughan, J. Barido-Sottani, S. Duchene, M. Fourment, A. Gavryushkina, J. Heled, G. Jones, D. Kuhnert, and N. De Maio. 2019. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Comp. Biol. 15(4): e1006650.
- Brown, B. P., and Z. Yang. 2011. Rate variation and estimation of divergence times using strict and relaxed clocks. BMC Evol. Bio. 11(1): 271.
- Bukontaite, R., K. B. Miller, and J. Bergsten. 2014. The utility of CAD in recovering Gondwanan vicariance events and the evolutionary history of Aciliini (Coleoptera: Dytiscidae). BMC Evol. Biol. 14(1): 1-18.
- Cao, W., S. Zahirovic, N. Flament, S. Williams, J. Golonka, and R. D. Muller. 2017. Improving global paleogeography since the late Paleozoic using paleobiology. Biogeosciences. 14(23): 5425-5439.
- Chazot, N., D. L. De -Silva, K. R. Willmott, A. V. Freitas, G. Lamas, J. Mallet, C. E. Giraldo, S. Uribe, and M. Elias. 2018. Contrasting patterns of Andean diversification among three diverse clades of Neotropical clearwing butterflies. Ecol. Evol. 8(8): 3965-3982.
- Clark, H. 1863. Descriptions of new East-Asiatic species of Haliplidae and Hydroporidae. T. R. Ent. Soc. London. 1(3): 417-428.
- Colgan, D. J., A. McLauchlan, G. D. F. Wilson, S. P. Livingston, G. D. Edgecombe, J. Macaranas, G. Cassis, and M. R. Gray. 1998. Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution. Austn. J. Zool. 46: 419-437.
- Condamine, F. L., N. S. Nagalingum, C. R. Marshall, and H. Morlon. 2015. Origin and diversification of living cycads: a cautionary tale on the impact of the branching process prior in Bayesian molecular dating. BMC Evol. Biol. 15: 65.
- Condamine, F. L., A. B. Leslie, and A. Antonelli. 2017. Ancient islands acted as refugia and pumps for conifer diversity. Cladistics. 33(1): 69-92.
- Cruaud, A., R. Jabbour-Zahab, G. Genson, S. Ungricht, and J. Y. Rasplus. 2012. Testing the emergence of New Caledonia: fig wasp mutualism as a case study and a review of evidence. PLoS One. 7(2): e30941.
- Cruaud, A., S. Nidelet, P. Arnal, A. Weber, L. Fusu, A. Gumovsky, J. Huber, A. Polaszek, and J. Y. Rasplus. 2019. Optimized DNA extraction and library preparation for minute arthropods: application to target enrichment in chalcid wasps used for biocontrol. Mol. Ecol. Resour. 19(3): 702-710.
- Degnan, J. H., and N. A. Rosenberg. 2006. Discordance of species trees with their most likely gene trees. PLoS Genet. 2(5): e68.
- Dressler, C., Ge, S.-Q., and R. G. Beutel. 2011. Is Meru a specialized noterid (Coleoptera: Adephaga)? Syst. Entomol. 36: 705-712.
- Drummond, A. J., S. Y. Ho, M. J. Phillips, and A. Rambaut. 2006. Relaxed phylogenetics and dating with confidence. PLoS Biol. 4(5): e88.
- Fauvel, A. 1903. Faune analytique des coleopteres de la Nouvelle-Caledonie. Rev. Entomol. 22: 203-379.
- Gillett, C. P., and E. F. Toussaint. 2020. Macroevolution and shifts in the feeding biology of the NewWorld scarab beetle tribe Phanaeini(Coleoptera:Scarabaeidae: Scarabaeinae).Biol.J.Linn.Soc.130(4):661-682.
- Gomez, R. A., and K. B. Miller. 2013. Prionohydrus, a new genus of Noterini Thomson (Coleoptera: Noteridae) from South America with three new species and itsphylogenetic considerations. Ann. Entomol. Soc. Am. 106: 1-4.
- Grandcolas, P. 2017. Ten false ideas about New Caledonia biogeography. Cladistics. 33(5): 481-487.
- Guimaraes, B. A., and N. Ferreira Jr. 2019. Two new species and new records of Notomicrus Sharp, 1882 (Coleoptera:Noteridae) from Brazil. Zootaxa. 4629(2): 263-270.
- Gustafson, G. T., and K. B. Miller. 2017. Systematics and evolution of the whirligig beetle tribe Dineutini (Coleoptera: Gyrinidae: Gyrininae). Zool. J. Linn. Soc. 181(1): 118-150.
- Gustafson, G. T., S. M. Baca, A. M. Alexander, and A. E. Z. Short. 2020. Phylogenomic analysis of the beetle suborder Adephaga with comparison of tailored and generalized ultraconserved element probe performance. Syst. Entomol. 45: 552-570.
- Heads, M. 2019. Recent advances in New Caledonian biogeography. Biol. Rev. 94(3): 957-980.
- Hoang, D. T., O. Chernomor, A. Von Haeseler, B. Q. Minh, and L. S. Vinh. 2018. UFBoot2: improving the ultrafast bootstrap approximation. Mol. Biol. Evol. 35(2): 518-522.
- Hoorn, C., and F. Wesselingh. 2011. Amazonia: landscape and species evolution: a look into the past. John Wiley and Sons, Hoboken, NJ, USA.
- Kass, R. E., and A. E. Raftery. 1995. Bayes factors. J.Am. Stat. Assoc. 90(430): 773-795.
- Kato, M., A. Kawakita, and T. Kato. 2010. Colonization to aquifers and adaptations to subterranean interstitial life by a water beetle clade (Noteridae) with description of a new Phreatodytes species. Zool. Sci. 27: 717-722.
- Katoh, K., and D. M. Standley. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Bio. Evol. 30(4): 772-780.
- Kim, S. I., and B. D. Farrell. 2015. Phylogeny of world stag beetles (Coleoptera: Lucanidae) reveals a Gondwanan origin of Darwin's stag beetle. Mol. Phylogenet. Evol. 86: 35-48.
- Lanfear, R., B. Calcott, S. Y. Ho, and S. Guindon. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol. Bio. Evol. 29(6): 1695-1701.
- LeConte, J. L. 1863. New species of North American Coleoptera. Part 1. Smithsonian Miscelaneous Collect. 6(167): 1-92.
- Leys, R., C. H. Watts. S. J. Cooper, and W. F. Humphreys. 2003. Evolution of subterranean diving beetles (Coleoptera: Dytiscidae Hydroporini, Bidessini) in the arid zone of Australia. Evolution. 57(12): 2819-2834.
- Liu, L., and S. V. Edwards. 2009. Phylogenetic analysis in the anomaly zone. Syst. Biol. 58(4): 452-460.
- Maddison, D. R. 2008. Systematics of the North American beetle subgenus Pseudoperyphus (Coleoptera: Carabidae: Bembidion) based on morphological, chromosomal and molecular data. Ann. Carnegie. Mus. 77: 147-193.
- Manuel, M. 2015. The genus Notomicrus in Guadeloupe, with description of three new species (Coleoptera: Noteridae). Zootaxa. 4018 (4): 506-534.
- Maturana Russel, P., B. J. Brewer, S. Klaere, and R. R. Bouckaert. 2019. Model selection and parameter inference in phylogenetics using Nested Sampling. Syst. Biol. 68(2): 219-233.
- Matzke, N. J. 2013. Probabilistic Historical Biogeography: New Models for Founder-Event Speciation, Imperfect Detection, and Fossils Allow Improved Accuracy and Model-Testing. Front. of Biogeogr. 5(4): 242-248.
- Matzke, N. J. 2014. Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades. Syst. Biol. 63(6): 951-970.
- Matzke, N. J. 2018. BioGeoBEARS: BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts. version 1.1.1, published on GitHub. https://github.com/nmatzke/BioGeoBEARS. Accessed 24.vii.2020.
- Miller, K. B. 2009. On the systematics of Noteridae (Coleoptera: Adephaga: Hydradephaga): phylogeny, description of a new tribe, genus and species, and survey of female genital morphology. Syst. Biodiv. 7: 191-214.
- Miller, K. B. 2013. Notomicrus josiahi,a new species of Noteridae (Coleoptera) from Venezuela. Zootaxa. 3609(2): 243-247.
- Miller, K. B., and J. Bergsten. 2016. Diving beetles of the world: systematics and biology of the Dytiscidae. John Hopkins University Press, Baltimore, MD.
- Miller, M. A., W. Pfeiffer, and T. Schwartz. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees, pp. 1-8. In 2010 gateway computing environments workshop (GCE), 14 November 2010, Institute of Electrical and Electronics Engineers, New Orleans, LA.
- Minh, B. Q., H. A. Schmidt, O. Chernomor, D. Schrempf, M. D. Woodhams, A. Von Haeseler, and R. Lanfear. 2020. IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era. Mol. Bio. Evol. 37(5): 1530-1534.
- Muller, R. D., J. Cannon, X. Qin, R. J. Watson, M. Gurnis, S. Williams, T. Pfaffelmoser, M. Seton, S. H. J. Russell, and S. Zahirovic. 2018. GPlates: building a virtual Earth through deep time. Geochem. Geophys. Geosyst. 19(7): 2243-2261.
- Nilsson, A. N. 2011. A World Catalogue of the family Noteridae, or the Burrowing water beetles (Coleoptera: Adephaga). Version 16.VIII.2011. 1-54 pp. Downloaded from: http://www2.emg.umu.se/projects/biginst/ andersn/WCN/WCN_20110816.pdf. Accessed 29.i.2016.
- R Core Team. 2018. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.Rproject.org/
- Rambaut, A., A. J. Drummond, D. Xie, G. Baele, and M. A. Suchard. 2018. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Syst. Bio. 67(5): 901.
- Ree, R. H., and I. Sanmartin. 2018. Conceptual and statistical problems with the DEC+ J model of founder- event speciation and its comparison with DEC via model selection. J. Biogeogr. 45(4). 741-749.
- Sanchez-Herrera, M., C. D. Beatty, R. Nunes, C. Salazar, and J. L. Ware. 2020. An exploration of the complex biogeographical history of the Neotropical banner-wing damselflies (Odonata: Polythoridae). BMC Evol. Biol. 20(1): 1-14.
- Seton, M., R. M€uller, S. Zahirovic, C. Gaina, T. Torsvik, G. Shephard, A. Talsma, M. Gurnis, M. Turner, and M. Chandler. 2012. Global continental and ocean basin reconstructions since 200 Ma. Earth Sci. Rev. 113: 212-270.
- Sharp, D. 1882. On aquatic carnivorous Coleoptera or Dytiscidae. Scient. Tr. R. Dubl. Soc. 2: 179-1003.
- Simon, C., F. Frati, A. Beckenbach, B. Crespi, H. Liu, and P. Flook. 1994. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87: 651-701.
- Skilling, J. 2006. Nested sampling for general Bayesian computation. Bayesian Anal. 1(4): 833-859.
- Spangler, P. J. 1996. Four new stygobiontic beetles (Coleoptera: Dytiscidae; Noteridae; Elmidae). Insecta Mundi. 10: 241-259.
- Toledo, M. 2010. Noteridae: Review of the species occurring east of the Wallace line (Coleoptera), pp. 195-236. In M. A. Jach, and M. Balke (eds.), Water Beetles of New Caledonia (part1): monographs of Coleoptera Vol. 3. Zoologische-Botanische Gesellshaft, Vienna, AT.
- Toussaint, E. F., and C. P. Gillett. 2018. Rekindling Jeannel's Gondwanan vision? Phylogenetics and evolution of Carabinae with a focus on Calosoma caterpillar hunter beetles. Bio. J. Linn Soc. 123(1): 191-207.
- Toussaint, E. F., and A. E. Short. 2017. Biogeographic mirages? Molecular evidence for dispersal- driven evolution in Hydrobiusini water scavenger beetles. Syst. Entomol. 42(4): 692-702.
- Toussaint, E. F. A., R. G. Beutel, J. Moriniere, F. Jia, S. Xu, M. C. Michat, X. Zhou, D. T. Bilton, I. Ribera, J. Hajek, and M. Balke. 2016. Molecular phylogeny of the highly disjunct cliff water beetles from South Africa and China (Coleoptera: Aspidytidae). Zool. J. Linn. Soc. 176(3): 537-546.
- Toussaint, E. F. A., D. Bloom, and A. E. Z. Short. 2017a. Cretaceous West Gondwana vicariance shaped giant water scavenger beetle biogeography. J. Biogeogr. 44(9): 1952-1965.
- Toussaint, E. F. A., M. Seidel, E. Arriaga-Varela, J. Hajek, D. Kral, L. Sekerka, and M. Fikacek. 2017b. The peril of dating beetles.Syst.Entomol.42(1): 1-10.
- Toussaint, E. F. A., R. Tanzler, M. Balke, and A. Riedel. 2017c. Transoceanic origin of microendemic and flightless New Caledonian weevils. Roy. Soc. Open Sci. 4(6): 160546.
- Ueno, S.-I. 1957. Blind aquatic beetles of Japan, with some accounts of the fauna of Japanese subterranean waters. Arch. Hydrobiol. 53: 250-296.
- Ueno, S.-I. 1996. New phreatobiontic beetles (Coleoptera, Phreatodytidae and Dytiscidae) from Japan. J. Speleol. Soc. Japan. 21: 1-50.
- Van der Auwera, G., S. Chapelle, and R. De Wachter. 1994. Structure of the large ribosomal subunit RNA of Phytophthora megasperma, and phylogeny of oomycetes. FEBS lett. 338: 133-136.
- Vicente, N., G. J. Kergoat, J. Dong, K. Yotoko, F. Legendre, R. Nattier, and T. Robillard. 2017. In and out of the Neotropics: historical biogeography of Eneopterinae crickets. J. Biogeogr. 44(10): 2199-2210.
- Wild, A. L. and D. R. Maddison. 2008. Evaluating nuclear protein-coding genes for phylogenetic utility in beetles. Mol. Phylogen. Evol. 48(3): 877-891.
- Young, F. N. 1978. The New World species of the water-beetle genus Notomicrus (Noteridae). Syst. Ent. 3(3): 285-293.