Dataset Open Access

Data and Files for Zito, Rigon and Dunson (2022): "Inferring taxonomic affiliation from DNA barcoding aiding in discovery of new taxa"

Alessandro Zito

Researcher(s)
Tommaso Rigon
Supervisor(s)
David B. Dunson

This folder contains the data and the R code to reproduce the figures and tables in the paper Zito, Rigon and Dunson (2022) - "Inferring Taxonomic placement from DNA barcoding aiding in discovery of new taxa", accepted as open access publication in Methods in Ecology and Evolution.

The file "main_FinBOL.R" reproduces the tables in the main document and in the Supporting information available online for the analysis of the FinBOL data, while "main_Simulation_Section4_SI.R" reproduces the simulation in Section 4 of the Supporting information. 

All data are saved in the folder "data". For replicability purposes, we added version 2.13 of the RDP classifier to the repository, in the folder "RDP/java". This has been downloaded from https://sourceforge.net/projects/rdp-classifier/. 

For questions, contact the author at alessandro.zito@duke.edu
 

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Data_and_scripts_BayesANT.zip
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Publication date:
October 5, 2022
DOI:
10.5281/zenodo.7150668

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Grants:
European Commission:
  • LIFEPLAN - A Planetary Inventory of Life – a New Synthesis Built on Big Data Combined with Novel Statistical Methods (856506)
License (for files):
Creative Commons Attribution 4.0 International

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Version 1 10.5281/zenodo.7150668 Oct 5, 2022
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