Published June 29, 2022 | Version 1.0.3
Dataset Open

Octopus bimaculoides genome assembly

Authors/Creators

  • 1. University of Oregon, Institute of Neuroscience
  • 2. University of Oregon, Institute of Ecology and Evolution

Description

To facilitate identification of molecular cell types in the Octopus bimaculoides optic lobe, we conducted high fidelity long-read genomic and transcriptomic sequencing. Here, we provide open access to these datafiles, which resulted in a single-cell atlas of the O. bimaculoides visual system (https://doi.org/10.1016/j.cub.2022.10.015). Below, we include a new genome assembly and annotation, phylogenetic trees for genes referenced in the manuscript, Cell Ranger outputs, and R scripts and files for Seurat cluster analysis. Raw single-cell sequence files are deposited to NCBI SRA at BioProject ID PRJNA854179. If any of these files are used, we ask that the paper is cited.

Notes

This work was supported by National Institutes of Health R01NS118466-01 (C.M.N.) and R01NS118466-01S1 (C.M.N., J.O.SC.), Office of Naval Research N00014-21-1-2426 (C.M.N.), University of Oregon Renee James Seed Grant (A.C.M., C.M.N), National Science Foundation Graduate Research Fellowship Grant No. 1842486 (G.C.C.), and R01HG010774 (A.D.K).

Files

o_bimaculoides_hifi_v1.0.3.zip

Files (6.0 GB)

Name Size Download all
md5:4c3ff4e8de8204d2639c0c441c3bc277
6.0 GB Preview Download