Published October 1, 2022
| Version v1
Journal article
Open
Ensemble inversion for brain tumor growth models with mass effect - Results with BraTS20
Authors/Creators
- 1. Oden Institute, University of Texas at Austin, Texas, USA
- 2. University of Pennsylvania, Philadelphia, USA
Description
3D tumor growth inversion results for BraTS20 dataset using GLioblastoma Image Analysis (GLIA). GLIA is publicly available at Github
We provide the results for both training and validation datasets of BraTS20. The following is the file description:
| File name | Description |
|---|---|
| c_final.nii.gz | Tumor concentration at t=1.0 |
| seg_final.nii.gz | Tumor and healthy tissue segmentation at t=1.0 |
| disp_x_rec_final.nii.gz | Displacement field in x direction from t=0.0 to t=1.0 |
| disp_y_rec_final.nii.gz | Displacement field in y direction from t=0.0 to t=1.0 |
| disp_z_rec_final.nii.gz | Displacement field in z direction from t=0.0 to t=1.0 |
Note that the displacement fields are relative to the domain size which is \([0,2\pi]^3\).
Files
BraTS20_GLIA.zip
Additional details
References
- Subramanian, S., Scheufele, K., Himthani, N., Davatzikos, C. and Biros, G., 2021. Ensemble inversion for brain tumor growth models with mass effect. arXiv preprint arXiv:2106.06016.
- Subramanian, S., Gholami, A. and Biros, G., 2019. Simulation of glioblastoma growth using a 3D multispecies tumor model with mass effect. Journal of mathematical biology, 79(3), pp.941-967.
- Subramanian S, Scheufele K, Mehl M, Biros G. Where did the tumor start? An inverse solver with sparse localization for tumor growth models. Inverse problems. 2020 Feb 26;36(4):045006.
- Scheufele K, Subramanian S, Biros G. Fully automatic calibration of tumor-growth models using a single mpMRI scan. IEEE transactions on medical imaging. 2020 Sep 15;40(1):193-204.
- Subramanian S, Scheufele K, Himthani N, Biros G. Multiatlas calibration of biophysical brain tumor growth models with mass effect. InInternational Conference on Medical Image Computing and Computer-Assisted Intervention 2020 Oct 4 (pp. 551-560). Springer, Cham.