Published September 26, 2022 | Version 0.0.0

Sei whole-genome sequence class annotations

Authors/Creators

  • 1. Princeton University

Description

Sei sequence class whole-genome annotations are available in the following files:

  • sorted.hg38.tiling.bed.ipca_randomized_300.labels.merged.bed - The sorted, merged sequence class assignments from Louvain community clustering of the 30 million sequences, uniformly tiling the whole human genome. The fourth column is the sequence class number, with any sequence classes numbering 40-61 excluded from our analyses in the publication. Sequence classes 0-39 can be mapped to the following labels: https://github.com/FunctionLab/sei-framework/blob/main/model/seqclass.names

  • sorted.hg19.tiling.bed.ipca_randomized_300.labels.merged.bed - lifted over version of the hg38 BED file.

Files

Files (524.6 MB)

Name Size
md5:5147817f97c5a2cfb8c5bda3af9bc20e
261.6 MB Download
md5:aaa9448e31df3ec901aece56d6f82845
263.0 MB Download