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Published September 19, 2022 | Version v2
Dataset Open

LMAS Test Dataset - NIBSC Gut DNA Reference

Authors/Creators

  • 1. Instituto de Medicina Molecular João Lobo Antunes

Description

The twenty bacterial replicons of the National Institute for Biological Standards and Control (NIBSC) Gut Community Standards were used as reference. It includes the following strains:

Species Culture collection number Accession numbers Status Gut-Mix-RR Coverage (x) Gut-HiLo-RR Coverage (x)
Akkermansia muciniphila DSM 22959 NC_010655 Complete genome 33,33 0,94
Alistipes finegoldii DSM 17242 NC_018011 Complete genome 16,94 4,85
Anaerostipes hadrus DSM 3319 NZ_KB290627 Complete genome 24,04 6,89
Bacteroides thetaiotaomicron DSM 2079 NC_004663 Complete genome 5,99 17,19
Bacteroides uniformis DSM 6597 GCF_000154205 Scaffold 10,81 3,1
Bifidobacterium longum subsp. infantis DSM 20088 NC_011593 Complete genome 29,52 84,63
Bifidobacterium longum subsp. longum DSM 20219 GCF_900104835 Contig 40,19 115,1
Blautia wexlerae DSM 19850 GCF_000484655 Scaffold 11,68 0,34
Clostridium butyricum DSM 10702 GCF_000409755 Contig 11,21 32,09
Collinsella aerofaciens DSM 13712 GCF_902501475 Contig 44,03 12,61
Escherichia coli DSM 1103 CP009072 Complete genome 8,86 25,34
Eubacterium hallii DSM 3353 GCF_000173975 Contig 21,79 6,25
Faecalibacterium prausnitzii DSM 17677 NZ_CP048437 Complete genome 24,66 0,72
Lactobacillus gasseri DSM 20077 NC_008530 Complete genome 66 1,91
Parabacteroides distasonis DSM 20701 NC_009615 Complete genome 10,2 29,26
Prevotella copri DSM 18205 GCF_000157935 Scaffold 19,23 55,11
Prevotella melaninogenica DSM 7089 NC_014370,1 and NC_014371,1 2 Chromosomes 23,49 6,73
Roseburia hominis DSM 16839 NC_015977 Complete genome 18,31 5,24
Roseburia intestinalis DSM 14610 NZ_LR027880 Complete genome 12,04 0,34
Ruminococcus gauvreauii DSM 19829 GCF_000425525 Scaffold 14,04 0,41

The raw sequence data of the mock communities, with an even and staggered distribution of species, is available at:

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