Biodiversity Literature Repository
Published September 16, 2022 | Version v1
Journal article Restricted

Combination of Chloranthus flavus into C. nervosus based on morphological and molecular evidence

Creators

Description

Lu, Yong-Bin, Huang, Zhang-Ping, Qin, Xin-Mei, Zhang, Qiang (2022): Combination of Chloranthus flavus into C. nervosus based on morphological and molecular evidence. Phytotaxa 564 (2): 230-238, DOI: 10.11646/phytotaxa.564.2.6

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:CA343970FF8CA22CFFC4EC33ED6C7E3F
URL
http://publication.plazi.org/id/CA343970FF8CA22CFFC4EC33ED6C7E3F

Cites
Publication: 10.1093/bioinformatics/btu170 (DOI)
Publication: 10.1093/bioinformatics/btp348 (DOI)
Publication: 10.1093/nar/gkh340 (DOI)
Publication: 10.2307/25057953 (DOI)
Publication: 10.1186/s13059-020-02154-5 (DOI)
Publication: 10.1038/nmeth.4285 (DOI)
Publication: 10.1111/j.1095-8339.2000.tb01549.x (DOI)
Publication: 10.1111/j.1095-8339.2001.tb00573.x (DOI)
Publication: 10.3732/ajb.89.6.940 (DOI)
Publication: 10.1007/s006060200041 (DOI)
Publication: 10.11646/phytotaxa.391.4.6 (DOI)
Publication: 10.11931/guihaia.gxzw201812011 (DOI)
Publication: 10.1093/molbev/msu300 (DOI)
Publication: 10.1093/sysbio/sys029 (DOI)
Publication: 10.1098/rstl.1787.0035 (DOI)
Publication: 10.1111/j.1759-6831.2011.00129.x (DOI)
Publication: 10.3732/ajb.1400527 (DOI)
Has part
Taxonomic treatment: 10.5281/zenodo.7101451 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/360D4108FF88A22AFF4CE947EC097DB6 (URL)
Dataset: http://table.plazi.org/id/EADBA096FF8EA22EFF4CECACE8667E88 (URL)
Figure: 10.5281/zenodo.7087276 (DOI)
Figure: 10.5281/zenodo.7087278 (DOI)
Figure: 10.5281/zenodo.7087280 (DOI)
Is source of
Dataset: http://www.gbif.org/dataset/53c2bdc6-33b3-4b8c-aaf7-5ede5deea98a (URL)

References

  • Bolger, A.M., Marc, L. & Bjoern, U. (2014) Trimmomatic: a flexible trimmer for illumina sequence data. Bioinformatics 30: 2114-2120. https://doi.org/10.1093/bioinformatics/btu170
  • Capella-Gutierrez, S., Silla-Martinez, J.M. & Gabaldon, T. (2009) trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25: 1972-1973. https://doi.org/10.1093/bioinformatics/btp348
  • Collett, H. & Hemsley, W.B. (1889) On a collection of plants from Upper Burma and the Shan States. The Journal of the Linnean Society, Botany 28 (190): 118.
  • Doyle, J.J. & Doyle, J.L. (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
  • Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792- 1797. https://doi.org/10.1093/nar/gkh340
  • Gray, A. (1859) Diagnostic characters of new species of phaenogamous plants, collected in Japan by Charles Wright, botanist of the US North Pacific exploring expedition. With observations upon the relations of the Japanese flora to that of North America, and of other parts of the northern temperate zone. Memoirs of the American Academy of Arts and Science s 6: 377-452. https://doi.org/10.2307/25057953
  • Handel-Mazzetti, H.R.E. (1929) Chloranthaceae. In: Handel-Mazzetti, H.R.E. & Brotherus, V.F. (Eds.) Symbolae sinicae, vol. 7. Julius Springer, Wien. pp. 156-157.
  • Jin, J.J., Yu, W.B., Yang, J.B., Song, Y., DePamphilis, C.W., Yi, T.S. & Li, D.Z. (2020) GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biology 21: 1-31. https://doi.org/10.1186/s13059-020-02154-5
  • Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K., von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14: 587-589. https://doi.org/10.1038/nmeth.4285
  • Kong, H.Z. (2000a) Karyotypes of Sarcandra Gardn. and Chloranthus Swartz (Chloranthaceae) from China. Botanical Journal of the Linnean Society 133: 327-342. https://doi.org/10.1111/j.1095-8339.2000.tb01549.x
  • Kong, H.Z. (2000b) Systematics of the Genus Chlorantus Swartz (Chloranthaceae). Ph.D. Dissertation. Beijing: Institute of Botany, Chinese Academy of Sciences. https://ir.ibcas.ac.cn/handle/2S10CLM1/13986
  • Kong, H.Z. (2001) Comparative morphology of leaf epidermis in the Chloranthaceae. Botanical Journal of the Linnean Society 136: 279-294. https://doi.org/10.1111/j.1095-8339.2001.tb00573.x
  • Kong, H.Z., Chen, Z.D. & Lu, A.M. (2002a) Phylogeny of Chloranthus (Chloranthaceae) based on nuclear ribosomal ITS and plastid trnL-F sequence data. American Journal of Botany 89: 940-946. https://doi.org/10.3732/ajb.89.6.940
  • Kong, H.Z., Lu,A.M.& Endress, P.K. (2002b) Floral organogenesis of Chloranthus sessilifolius, with special emphasis on the morphological nature of the androecium of Chloranthus (Chloranthaceae). Plant Systematics and Evolution 232: 181-188. https://doi.org/10.1007/s006060200041
  • Liu, D.T., Cai, L. & Chen, G. (2019) Chloranthus flavus (Chloranthaceae), a new species from Guangxi, China. Phytotaxa 391: 273- 276. https://doi.org/10.11646/phytotaxa.391.4.6
  • Liu, T.S. (1996) Chloranthaceae. In: Huang, T.C. (Ed.) Flora of Taiwan, 2nd ed. Editorial Committee of the Flora of Taiwan, Taipei. pp. 632-635.
  • Lu, Y.B., Jiang, Y.L., Qin, X.M. & Zhang, Q. (2020) Morphological diversity and geographical distribution of Chloranthus in China. Guihaia 40: 31-43. https://doi.org/10.11931/guihaia.gxzw201812011
  • Makino, T. (1902) Observation on the Flora of Japan. The Botanical Magazine 16: 180.
  • Nguyen, L.T., Schmidt, H.A., Von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32: 268-274. https://doi.org/10.1093/molbev/msu300
  • Oliver, D. (1887) Chloranthus angustifolius, Oliv. Chloranthaceae. In: Hooker, W.J. (Ed.) Hooker's Icones Plantarum; or figures, with brief descriptive characters and remarks of new or rare plants. Longman, London. 1580 pp.
  • Pei, C. & Shan, R.H. (1938) A study of Chinese Chloranthus. Contributions from the Biological Laboratory of the Science Society of China: Botanical Series 10: 207-212.
  • Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539-542. https://doi.org/10.1093/sysbio/sys029
  • Siebold, P.F.von (1829) Einige wrote uber den Zustand der Botanik auf Iapan in einem Schreiben an den Praesidenten der Akademie: nebst einer Monographie der Gattung Hydrangea und einigen Proben japanischer Litteratur uber die Krauterkunde. Nova acta physicomedica Academiae Caesareae Leopoldino-Carolinae Naturae Curiosum 14 (2): 671-696.
  • Solms-Laub, H.M.C.L.F. (1869) Chloranthaceae. In: Candolle, A.L.P.P. (Ed.) Prodromus sytematis naturalis regni vegetabilis. Sumptibus victoris Masson et Filii, Parisiis. pp. 472-485.
  • Swartz, O. (1787) Chloranthus, a new genus of plants, described by Olof Swartz, M. D. communicated by Sir Joseph Banks, Bart. P. R. S. Philosophical Transactions of the Royal Society of London 77: 359-362. https://doi.org/10.1098/rstl.1787.0035
  • Thunberg, C.P. (1784) Flora Iaponica Sistens Plantas Insularum Iaponicarum. In Bibliopolio I.G. Mulleriano, Lipsiae. 65 pp.
  • Verdcourt, B. (1992) Chloranthaceae. In: Smitinand, T. & Larsen, K. (Eds.) Flora of Thailand. Chutima Press, Bangkok, Thailand. pp. 424-430.
  • Wu, K.F. (1982) Chloranthaceae. In: Tseng, Y.C. (Ed.) Flora Reipublicae Popularis Sinicae, vol. 20 (1). Science Press, Beijing. pp. 77-95.
  • Xia, N.H. & Jeremie, J. (1999) Chloranthaceae Blume. In: Wu, Z.Y., Raven, P.H. & Hong, D.Y. (Eds.) Flora of China, vol. 4. Science Press, Beijing, China; Missouri Botanical Garden, St. Louis. pp. 132-138.
  • Ye, J., McGinnis, S. & Madden, T.L. (2006) BLAST: improvements for better sequence analysis. Nucleic Acids Research 34 (suppl_2): W6-W9.
  • Zhang, Q., Antonelli, A., Feild, T.S. & Kong, H.Z. (2011) Revisiting taxonomy, morphological evolution, and fossil calibration strategies in Chloranthaceae. Journal of Systematics and Evolution 49: 315-329. https://doi.org/10.1111/j.1759-6831.2011.00129.x
  • Zhang, Q., Feild, T.S. & Antonelli, A. (2015) Assessing the impact of phylogenetic incongruence on taxonomy, floral evolution, biogeographical history, and phylogenetic diversity. American Journal of Botany 102: 566-580. https://doi.org/10.3732/ajb.1400527