Published September 13, 2022 | Version v1

Scaling protein-water interactions in the Martini 3 coarse-grained force field to simulate transmembrane helix dimers in different lipid environments

  • 1. Heidelbrg Institute of Theoretical Studies (HITS), Heidelberg University
  • 2. Heidelberg Institute for Theoretical Studies (HITS), Center for Molecular Biology (ZMBH), DKFZ-ZMBH Alliance, Heidelberg University

Description

This dataset contains molecular dynamics (MD) trajectories used for preparation of the following manuscript: 
"Scaling protein-water interactions in the Martini 3 coarse-grained force field to simulate transmembrane helix dimers in different lipid environments". 

Notes

The authors acknowledge support by the state of Baden-Württemberg through bwHPC and the German Research Foundation (DFG) through grant INST 35/1134-1 FUGG and the Klaus Tschira Foundation.

Files

GpA.zip

Files (46.4 GB)

Name Size
md5:4ead5d703e1bff428a115a1aaa71c11f
21.3 GB Preview Download
md5:41b700bb3a34591f29e8938f45ede212
3.1 GB Preview Download
md5:844c8d00572e7a6cbe022f227e504888
15.5 GB Preview Download
md5:21b1bee07c65e852ec4437e69ee6588f
2.3 kB Download
md5:cf6ab4f1728aea913baa237d8d2224d7
6.5 GB Preview Download

Additional details

Funding

European Commission
EuroNeurotrophin - A European training network for the discovery of neurotrophins small molecule mimetics as candidate therapeutic agents for neurodegeneration and neuroinflammation 765704