Published September 4, 2022 | Version v1

BCL6 deletion in CD4 T cells reveals Th2 eff mediated immunity in the skin

  • 1. Malaghan Institute of Medical Research, Wellington, New Zealand
  • 2. Department of Immunology, Harvard Medical School, Boston, MA, USA

Description

RNA-Seq datasets related to the study of Mouse Tfh cells.

Recent studies propose that Group 2 T follicular helper (Tfh) cells have a higher degree of functional plasticity in addition to their well-defined roles in mediating IL-4-dependent switching of germinal centre B cells to the production of IgG1 and IgE antibodies. In particular Tfh cells have been proposed to be an essential stage in Th2 effector cell development that are able to contribute to innate Type 2 responses. We used CD4-cre targeted deletion of BCL6 to identify the contribution Tfh cells make to tissue Th2 effector responses in models of skin atopic disease   and lung immunity to parasites. Ablation of Tfh cells did not impair the development or recruitment of Th2 effector subsets to the skin and did not alter the transcriptional expression profile or functional activities of the resulting tissue resident Th2 effector cells. However, the accumulation of Th2 effector cells in lung Th2 responses was partially affected by BCL6 deficiency. These data indicate that the development of Th2 effector cells does not require a BCL6 dependent step implying Tfh and Th2 effector populations follow separate developmental trajectories and Tfh cells do not contribute to Type 2 responses in the skin . This study reveals important findings that add to the growing literature around the plasticity and functional interconversion of T helper subsets. 

Notes

This Zenodo contains raw data, used for RNA-Seq analysis as fastq files. It also contains trimmed, mapped, and counted raw count expresion tables. The normalised counts are also available with their associated log2 fold change expression and adjusted p-value tables from using DESeq2. VSTpk (Variance Stabilised Transcripts Per Kilobase) counts are also made available that we found valuable for heatmaps, and other visualisations.

Files

adjusted_pvalues_associated_to_all_l2fc_comparisons.csv

Files (12.7 GB)

Name Size
md5:edceb9839fac631ab240a9394911e65d
12.6 MB Preview Download
md5:a74bd3740ac16153d2b50262933dfca3
6.1 MB Preview Download
md5:14eebb8bff88d333722aaaf42fb0aff4
1.1 kB Preview Download
md5:edceb9839fac631ab240a9394911e65d
12.6 MB Preview Download
md5:1aa664340b0b19386fa3edba11919ef3
11.8 MB Preview Download
md5:e8822269cfddfa274cfd0df615d10958
2.6 MB Preview Download
md5:c6c8a8bf09c2f8e3383b85002e9f4f84
300.3 MB Download
md5:c2cc96a8deeb4e0207b547c4b8df0a0e
306.1 MB Download
md5:f16aa06a58828b07bc5847f9257fad11
342.0 MB Download
md5:9a3b9c23619a4925152b42f1ddbf90bd
347.9 MB Download
md5:9140ddce8ec2025aa361b6dd6cf7eef0
247.9 MB Download
md5:7e9bf075167dbae82d938d231bf38fdb
252.0 MB Download
md5:5c84f4ccfe5011387c8312d6c652d8a4
262.5 MB Download
md5:2bf6b66758a60954b413b227f769802a
267.7 MB Download
md5:d63f4a9921b7b4b84969648054947bdb
267.9 MB Download
md5:840042ea84426f1d8554ae970e706028
272.3 MB Download
md5:dc5f59b67f0b77d11bc5d521c68f81c0
301.0 MB Download
md5:bb96f5da53ff7e3e1eb3cbc71a81457c
307.3 MB Download
md5:75b5eecb610285e5679119cf112bf4d6
274.9 MB Download
md5:e989b45282d8bb29cc898d346f0ef99b
281.8 MB Download
md5:d6e9a099c75bcb17c3eb92db4c0966f3
287.5 MB Download
md5:cf1a63d5979a332028ccf2c4c8b46134
293.4 MB Download
md5:3cd2e46d209364f374f89cf6e14520ac
298.9 MB Download
md5:af764b5c75bed11f333643c1c75bd74b
304.6 MB Download
md5:99a9188937e4a868c05f455640cbf704
302.5 MB Download
md5:c5f1ad7bd163473b1127284091037b00
308.8 MB Download
md5:76b26efd258b28c537e09c279da24455
327.9 MB Download
md5:a30dcae016980c087de043a3cef78e18
337.2 MB Download
md5:f80f49b497d2e113e9b101aed91b5312
300.7 MB Download
md5:96c6de1abdb1701d12919090c2f9b86f
308.1 MB Download
md5:76cef7e08285d817a3277e1805dd5fcb
276.7 MB Download
md5:7f7a369d364241008335c3fdebb5c70f
283.3 MB Download
md5:bb4e18a74c97d6235186ec4ffe4dae2a
255.5 MB Download
md5:a94149fde1fbd4635b7bbdb5e329b6e2
260.6 MB Download
md5:32cfd2bf6d08e2ffd9cf0d2639ab8d2a
315.5 MB Download
md5:58d17cde732a188fbdbaaae9d1254d1d
322.3 MB Download
md5:253c5e3decbfddd2f8d325b665115c67
305.4 MB Download
md5:1cf19c4f1c6406fd34adedbf6723a641
311.6 MB Download
md5:90a5c54caddbe9d7d8a7199a1f6b06b7
294.6 MB Download
md5:72b3759ea7dda64822a205c6a6b6f874
301.5 MB Download
md5:0ad2063551231de88d4c2c1996653f21
307.1 MB Download
md5:aa857082be750220d4cdb69d68d8d94f
313.4 MB Download
md5:d1e024149785b4c5d63111791f7968b0
341.1 MB Download
md5:8eeda7a6e00f4aee227e52c95e39123d
349.3 MB Download
md5:0fec2decb5ec1ac98201f08b30ad9749
311.4 MB Download
md5:b3d8a57fc6d5dee076e90f67a44c2943
318.1 MB Download
md5:87cca0d394a46f61b02f1384ab0d8cfe
343.9 MB Download
md5:8f51f9ae52a6e1c5071c1dde08133bc9
352.1 MB Download
md5:7e9ee8930fbf0de79a318eefe5a92ff8
21.0 MB Preview Download