Processed KnockTF2 experiments of human cells

Processed perturbation experiments of human cells from KnockTF2 to easily benchmark methods and networks using decoupleR.

The file Human Differential Expression of Genes was processed to extract a matrix of logFCs were experiments are rows and genes are columns. Their associated meta-data was downloaded from the Browse tab. Identifiers were unified to match both matrix and meta-data.

I do not claim ownership of these data. If used, please cite their original source:

Chenchen Feng, Chao Song, Yuejuan Liu, Fengcui Qian, Yu Gao, Ziyu Ning, Qiuyu Wang, Yong Jiang, Yanyu Li, Meng Li, Jiaxin Chen, Jian Zhang, Chunquan Li, KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors, Nucleic Acids Research, Volume 48, Issue D1, 08 January 2020, Pages D93–D100, https://doi.org/10.1093/nar/gkz881