Genome-wide identification of cell-surface and intracellular immune receptors in 350 plant species
Authors/Creators
- 1. RIKEN Center for Sustainable Resource Science, Yokohama, Japan
- 2. The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK
- 3. MWSchmid GmbH, 8750 Glarus, Switzerland
Description
Here we identified cell-surface (LRR-RLKs, LRR-RLPs, LysM-RLKs and LysM-RLPs) and intracellular immune receptors (NB-ARCs) from the genomes of 350 plant species.
Zip file contains:
Folder 'Immune_receptor_sequences' - FASTA files of the identified LRR-RLPs, Lys-RLKs, LysM-RLPs and NB-ARCs.
Folder 'RLK_sequences' - FASTA files of the identified LRR-RLKs (all and 20 individual subgroups).
Folder 'RLK_trees' - Phylogenetic TREE files of the identified LRR-RLKs (all and 20 individual subgroups); classified according to their kinase domains.
238.species - Phylogenetic tree of the 238 plant species used in the analyses (taken from https://doi.org/10.1093/jpe/rtv047).
350.species - Phylogenetic tree of the 350 plant species used in the analyses.
simple.to.original.ids- Translator file for the original ID of each gene.
Files
Dataset.zip
Additional details
Related works
- Is supplement to
- Preprint: 10.1101/2022.01.01.474684 (DOI)
- Journal article: 10.1038/s41477-022-01260-5 (DOI)
Funding
- UK Research and Innovation
- The Norwich Research Park Biosciences Doctoral Training Partnership BB/M011216/1