Software Open Access
BRANEnet: Embedding Multilayer Networks for Omics Data Integration
surabhi Jagtap;
Aurélie Pirayre;
Frédérique Bidard;
Laurent Duval;
Fragkiskos D. Malliaros
Contact person(s)
surabhi Jagtap
BRANEnet is a novel multi-omics integration framework for multilayer heterogeneous networks. In particular, it embeds graph-based information from multi-omics data in a lower-dimensional space. To capture relevant context around each node of interest, it leverages a properly chosen random walk-based Positive Pointwise Mutual Information (PPMI) matrix.
Files
(12.4 MB)
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|---|---|---|
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BRANEnet-main.zip
md5:5068cdc8c2d6a8000b6ef13d6ced9279 |
12.4 MB | Download |
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| Views | 198 | 198 |
| Downloads | 4 | 4 |
| Data volume | 49.7 MB | 49.7 MB |
| Unique views | 177 | 177 |
| Unique downloads | 4 | 4 |
Indexed in
- Publication date:
- August 18, 2022
- DOI:
-
- Keyword(s):
- multi-omics data multilayer network biological network integration graph representation learning regulatory network inference
- Grants:
-
Agence Nationale de la Recherche:
- GraphIA - Scalable and robust representation learning on graphs (ANR-20-CE23-0009)
- Related identifiers:
- Cited by
- 10.21203/rs.3.rs-1588328/v1 (Software documentation)
- License (for files):
- Creative Commons Attribution 4.0 International