There is a newer version of the record available.

Published August 11, 2022 | Version 1.3.0
Dataset Open

Dataset for demonstration of quantitative label-free imaging with phase and polarization

Authors/Creators

  • 1. Chan Zuckerberg Biohub

Description

The QLIPP_Reconstruction_Resources_20x.zip  file contains raw images of mouse brain slice and anisotropic glass target acquired with QLIPP. The file also contains the configuration files to reconstruct the phase, retardance, and orientation from this data with the recOrder pipeline. The tutorial slides for using this dataset for reconstruction can be found here (10.5281/zenodo.5135889).

 

v1.1.0: Upload two zip files for automated testing of recOrder and waveOrder repositories.

v1.2.0: add pycromanager dataset for testing the reader and converter in waveOrder.

v1.3.0: reduce the size of recOrder test dataset

Files

QLIPP_Reconstruction_Resources_20x.zip

Files (995.0 MB)

Name Size
md5:6ae24ddab3e6a62d35b8a20bc6e372c0
968.3 MB Preview Download
md5:7580c46c3713750895780dac16a20218
26.7 MB Preview Download

Additional details

Related works

Cites
Presentation: 10.5281/zenodo.5135889 (DOI)
Is referenced by
Software: https://github.com/mehta-lab/recOrder (URL)
Software: https://github.com/mehta-lab/waveOrder (URL)
Is supplement to
Journal article: 10.7554/eLife.55502 (DOI)