Published August 3, 2022 | Version 1.0.0
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scRNAseq analysis of peripheral blood from a family with MAD1L1 mutations

Authors/Creators

  • 1. Spanish National Cancer Research Centre (CNIO) Madrid

Description

Python - Jupyter notebooks for the analysis of single-cell RNAseq data from peripheral blood mononuclear cells with a family with MAD1L1 mutations and a syndrome of mosaic variegated aneuploidy and high tumor susceptibility. Files include preprocessing of 10xGenomics data, inferCNV analysis, cellphoneDB analysis and general scRNAseq analysis using scanpy.

Files

210818_preprocessing.ipynb

Files (71.7 MB)

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md5:0ad41b7816b5645bd6ffdbaf3ac0a9a8
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md5:9eea555e352dd9c918527831f7251a4c
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md5:8a876b38545512a3b0f7625a57e930c7
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Additional details

Related works

Is supplemented by
Software documentation: https://malumbreslab.org/ (URL)
References
Dataset: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197267 (URL)