Published July 31, 2022
| Version v1
Dataset
Open
A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems
Authors/Creators
- 1. American University of Beirut
- 2. ETH Zürich
Description
Sequence alignment is a fundamentally memory bound computation whose performance in modern systems is limited by the memory bandwidth bottleneck. Processing-in-memory architectures alleviate this bottleneck by providing the memory with computing competencies. We propose Alignment-in-Memory (AIM), a framework for high-throughput sequence alignment using processing-in-memory, and evaluate it on UPMEM, the first publicly-available general-purpose programmable processing-in-memory system.
Files
synthetic1Ml10000e1.zip
Files
(29.9 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:f2bc450b3460eb5495df6cfdd7c41d32
|
1.0 GB | Download |
|
md5:0379f0a5a6f81a1777cbb1ec7a83da3b
|
1.0 GB | Download |
|
md5:72df2c9ca169085b2fe6fec337d1b829
|
1.5 GB | Download |
|
md5:68a2aae36e9733931567ac809a95ed9a
|
1.5 GB | Download |
|
md5:4654f675c5db7404419a2ce5e5543fe7
|
2.5 GB | Download |
|
md5:86d204aef368cdac52c71b4f54baf13e
|
2.5 GB | Download |
|
md5:b16344a708e3526e5b635be8f4044aa2
|
1.7 GB | Preview Download |
|
md5:badbc71501b2669f47f6ae7e3f75e414
|
2.2 GB | Preview Download |
|
md5:96d02528652d240ca1db9f771286eb62
|
844.7 MB | Preview Download |
|
md5:f67b9750ec1c8dd6e0422e32349c38be
|
1.1 GB | Preview Download |
|
md5:f31d861057cd81ec2b9c503d7d5a0df6
|
1.8 GB | Preview Download |
|
md5:5a1aa3bcc878e13c1d44dc063fb4da96
|
5.0 GB | Download |
|
md5:0864703b5487b6a2868e5d561a05987a
|
5.0 GB | Download |
|
md5:19069179d9e8d00cd3340fe1d6d6bb21
|
2.1 GB | Preview Download |