Transposable element (TE) subfamily cis-regulatory activities estimated from 441 transgene overexpression experiments in human embryonic stem cells (hESCs)

Additional file 1 from "Statistical learning quantifies transposable element-mediated cis-regulation", Pulver et al.

Raw expression data came from Nakatake et al., Cell Reports 2020

Activities were estimated using craTEs, described in Pulver et al. 2022

Row names are transposable element (TE) subfamilies, columns are as follow:

• Estimate: estimated cis-regulatory activity, correponds to a linear regression coefficient
• Std. Error: standard error of linear regression coefficient
• t value: t value corresponding to t-test with H0: Estimate = 0 and HA: Estimate != 0
• Pr(>|t|) : probability (p-value) of observing a more extreme t value
• p_adj: p-values adjusted with the Benjamini Hochberg procedure
• TE: TE subfamily
• condition: concatenation of the name of the overexpressed transgene and the timepoint
• transgene: symbol for the overexpressed transgene
• timepoint: time under transgene induction via DOX treatment