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Files for Micromonas and heterotrophic bacteria matrix

xavierfe

Files for the co-culture transcript expression of Micromonas commoda RCC299 with Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, or Polaribacter sp. MED152.

Files (96.4 MB)
Name Size
DSS3_aa
md5:79837ce11a0bc959761f03ca831b2af8 		1.5 MB Download
DSS3_Aug2020.fa
md5:2586de8b58d07e1acbbeeba61301db08 		4.7 MB Download
DSS3_Aug2020.gff
md5:de8352260fc8c731ef3c9e4dc38f1ab8 		3.9 MB Download
HTSeq_DSS3_299_rep1_Sample_1.txt
md5:cd7dc2d8ec4076e1c231a4cd581c7455 		56.2 kB Download
HTSeq_DSS3_299_rep2_Sample_2.txt
md5:08197b50c9fd5e0a0d1a1e268f089193 		56.3 kB Download
HTSeq_DSS3_299_rep3_Sample_3.txt
md5:ea07ac26c93e6810a4442a61c631bf44 		55.8 kB Download
HTSeq_DSS3_299_rep4_Sample_4.txt
md5:8f00fa32130c5f6a3bf9748e826237f9 		54.9 kB Download
HTSeq_DSS3_Control_rep1_sample_17.txt
md5:d76bfd0cadff77ac7557d968dc6f2e4a 		55.4 kB Download
HTSeq_DSS3_Control_rep2_sample_18.txt
md5:01c499e8438515d6fded2cf3b185b6b7 		56.5 kB Download
HTSeq_DSS3_Control_rep3_sample_19.txt
md5:29464b51621d86e9fc9843e8778f1116 		58.0 kB Download
HTSeq_DSS3_Control_rep4_sample_20.txt
md5:bf76ef0d5dcbc0b7dba79cb9c2b0855e 		57.3 kB Download
HTSeq_MED152_299_rep1.txt
md5:c28c69dd447c671552e402b0b708c596 		33.1 kB Download
HTSeq_MED152_299_rep3.txt
md5:e0f06a2730424829bca1f55394a7c791 		32.4 kB Download
HTSeq_MED152_299_rep4.txt
md5:ddbc036fe63d53b0a6d7f5cef764e06b 		28.3 kB Download
HTSeq_MED152_Control_rep1.txt
md5:ad50af11334c8b679cfc43d0521d2844 		33.1 kB Download
HTSeq_MED152_Control_rep2.txt
md5:dfceb3e5d4d9f3efb246c1e8bf8dfd97 		31.9 kB Download
HTSeq_MED152_Control_rep3.txt
md5:9f94005b5ee9ee8951592c2a8edc5905 		33.4 kB Download
HTSeq_MED152_Control_rep4.txt
md5:c65de8ee4279ac19b32523007d72d28f 		33.1 kB Download
HTSeq_Micromonas_1_with_DSS3.txt
md5:74f38de4c0a92b47ec7b8103b7b041e6 		135.6 kB Download
HTSeq_Micromonas_rep1_axenic.txt
md5:eddfe2796288df0ce18735d60d306833 		142.0 kB Download
HTSeq_Micromonas_rep1_with_MED152.txt
md5:16e71e6306162db6c5c832f649db1dd4 		142.8 kB Download
HTSeq_Micromonas_rep1_with_SKA14.txt
md5:b0e20b6e4c4757bc536bcd19658a81e7 		137.4 kB Download
HTSeq_Micromonas_rep2_axenic.txt
md5:6b3e444448987d94628a31e48ed504cd 		135.3 kB Download
HTSeq_Micromonas_rep2_with_DSS3.txt
md5:c7982494f4ec199040c8f4fcd9ed2615 		140.1 kB Download
HTSeq_Micromonas_rep2_with_MED152.txt
md5:e3009991ac362ee29d546c30c9042b4a 		133.5 kB Download
HTSeq_Micromonas_rep2_with_SKA14.txt
md5:165d89c8a3241a13a2057503cc81baf5 		140.4 kB Download
HTSeq_Micromonas_rep3_axenic.txt
md5:7d953dfbb8a38f3c46f679ce5b55d5c7 		136.8 kB Download
HTSeq_Micromonas_rep3_with_DSS3.txt
md5:74e6b0be480159a21991b884a905a30f 		138.0 kB Download
HTSeq_Micromonas_rep3_with_MED152.txt
md5:501f3b3afa36df429399c49500c3aaf5 		134.9 kB Download
HTSeq_Micromonas_rep3_with_SKA14.txt
md5:fb47683f35caac793757146432177d08 		143.4 kB Download
HTSeq_Micromonas_rep4_with_DSS3.txt
md5:79c0d8f50cd62d8bcd69c730856e3255 		140.7 kB Download
HTSeq_SKA14_299_rep1.txt
md5:068ef4a207462ce10636df69e99f64ed 		52.7 kB Download
HTSeq_SKA14_299_rep3.txt
md5:c586435a85f1388ce79ffa58c874fea7 		54.1 kB Download
HTSeq_SKA14_299_rep4.txt
md5:b862718469c25ebbe2c69ee117d71385 		55.5 kB Download
HTSeq_SKA14_Control_rep1.txt
md5:2888da244b6daede4b56570b678758da 		55.1 kB Download
HTSeq_SKA14_Control_rep2.txt
md5:a9bd5c997054b812db97d94262f3f879 		54.4 kB Download
HTSeq_SKA14_Control_rep3.txt
md5:3a9a41b419e4db710ea32e59b4dcc44c 		56.5 kB Download
HTSeq_SKA14_Control_rep4.txt
md5:7c7692ae27e384265d1f346191da4f87 		54.4 kB Download
MicpuN3v2_AssemblyScaffolds.fasta
md5:aa47ad8d2be338fb68e6baefa833f2ed 		21.3 MB Download
MicpuN3v2_AssemblyScaffolds.fasta.gz
md5:b9c6eab30022707c35c20cf8293c0016 		6.3 MB Download
MicpuN3v2_GeneCatalog_genes_20160404.gff3
md5:777882ff168b787d42945ad91f08177a 		5.3 MB Download
MicpuN3v2_GeneCatalog_genes_20160404.gff3.gz
md5:2bbffe6f7dfaefef7da911e7a2cdbefc 		893.7 kB Download
MicpuN3v2_GeneCatalog_proteins_20131216_GO.tab.gz
md5:f839938f332a80f2e5cae0f3aedc8e79 		250.3 kB Download
MicpuN3v2_GeneCatalog_proteins_20160404.aa.fasta
md5:f9e1b2955446616c8a5d4337dc26cabd 		6.1 MB Download
MicpuN3v2_GeneCatalog_proteins_20160404.aa.fasta.gz
md5:9fdf7d504e502df0124af57d9cb6d367 		3.4 MB Download
MicpuN3v2_GeneCatalog_proteins_20180425_GO.tab
md5:7a8698679ce322ed823f6311d9ae30fb 		1.8 MB Download
MicpuN3v2_GeneCatalog_proteins_20180425_GO.tab.gz
md5:121c4341cfc1c3a80e53f930983308fb 		250.4 kB Download
MicpuN3v2_GeneCatalog_transcripts_20160404.nt.fasta
md5:b2dc845c477f622d4e858ac474a11c7a 		19.2 MB Download
MicpuN3v2_GeneCatalog_transcripts_20160404.nt.fasta.gz
md5:3b71611b4f3221b8aa789933e712d3ab 		5.7 MB Download
PolaribacterMED152.fna
md5:c023fdc0bddfa63daefc1d0e678d402b 		3.0 MB Download
PolaribacterMED152.gff
md5:2a7b137ef61bebe6b3977b3a523406c0 		1.2 MB Download
RCC299_JGI_CAZymes_5-5-2022.txt
md5:7cd5bc4e970cdc7a4bc9d28f3d42e687 		26.1 kB Download
RCC299_JGI_CAZymes_5-5-2022.xlsx
md5:cd025c6da064ca7180269933e5dae551 		30.9 kB Download
rRNA_custom_db.fastq.txt
md5:e529dba992dea75891854cf0e45b854a 		1.3 MB Download
StenotrophomonaSKA14.fna
md5:2eb97190d6677a97d9d70720eac3f716 		5.1 MB Download
StenotrophomonasSKA14.gff
md5:f6f8d4c2c6bef0e13ffb5833d3569e00 		2.1 MB Download
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Publication date:
January 5, 2022
DOI:
10.5281/zenodo.6812122

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10.5281/zenodo.6812122

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Keyword(s):
Transporters, CAZymes, heterotrophic bacteria, phytoplankton substrates, picoeukaryotes, DOC flux
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License (for files):
Creative Commons Attribution 1.0 Generic

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Version V1.0 10.5281/zenodo.6812122 Jan 5, 2022
Version V1.0 10.5281/zenodo.5822681 Jan 5, 2022
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