Published July 7, 2022
| Version 1.1.0
Dataset
Open
CNP0001986 gVCFs part 2
Creators
- 1. University of the Basque Country
- 2. University of Edinburgh
- 3. Beebytes Analytics CIC
- 4. INRAE Toulouse
Description
Sequencing reads were aligned to the Amel_HAv3.1 reference genome using BWA-MEM v0.7.17. Reads were sorted with SAMtools v1.9 and duplicates marked (MarkDuplicates) with GATK v4.0.11.0. Variants for each sample were called using GATK’s HaplotypeCaller with the following non-default parameters --ERC GVCF, --sample-ploidy 2 and -A AlleleFraction. This dataset comprises the gVCF files for a subset of diploid samples from Chen et al. (2022), belonging to project accession: CNP0001986.
Files
Files
(39.6 GB)
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