Published July 5, 2022 | Version v1
Dataset Open

Supplementary table of PRIDE datasets analyzed for "FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data"

Authors/Creators

  • 1. Novo Nordisk Foundation Center of Protein Research
  • 2. VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium

Description

Our proteomics dataset comes from The PRoteomics IDEntifications (PRIDE) database, the world’s largest data repository of mass spectrometry-based proteomics data. Specifically, we used 633 human proteomics project experiments with a total of 32,546 runs and reanalyzed them using ionbot with an FDR threshold of 0.01 [16], resulting in a total of 154,885,151 peptide spectrum matches for 18,846 proteins. Here is the full list of projects, runs, and general statistics.

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