Published July 2, 2022
| Version v1
Dataset
Open
Illumina HD genotypes for 3,092 cattle from Burkina Faso, Ghana, Nigeria and Tanzania for: "Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle"
Authors/Creators
-
Riggio, Valentina1
- Tijjani, Abdulfatai2
- Callaby, Rebecca1
- Talenti, Andrea3
- Wragg, David3
- Obishakin, Emmanuel T.4
- Ezeasor, Chukwunonso5
- Jongejan, Frans6
- Ogo, Ndudim I.7
- Aboagye-Antwi, Fred8
- Toure, Alassane9
- Nzalawahej, Jahashi10
- Diallo, Boubacar11
- Missohou, Ayao12
- Belem, Adrien M.G.13
- Djikeng, Appolinaire1
- Juleff, Nick14
- Fourie, Josephus15
- Labuschagne, Michel16
- Madder, Maxime17
- Marshall, Karen18
- Prendergast, James G.D.3
- Morrison, Liam J.3
- 1. The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, EH25 9RG; Centre for Tropical Livestock Genetics and Health (CTLGH), Roslin Institute, University of Edinburgh, Easter Bush Campus, EH25 9RG, UK
- 2. Centre for Tropical Livestock Genetics and Health (CTLGH), ILRI Ethiopia, P.O Box 5689, Addis Ababa, Ethiopia
- 3. The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, EH25 9RG
- 4. Biotechnology Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria; Biomedical Research Centre, Ghent University Global Campus, Songdo, Incheon, South Korea
- 5. Department of Veterinary Pathology and Microbiology, University of Nigeria, Nsukka. Enugu State, Nigeria
- 6. Department of Veterinary Tropical Diseases, Faculty of Veterinary Science, University of Pretoria, Onderstepoort, South Africa
- 7. National Veterinary Research Institute, Vom, Nigeria
- 8. Department of Animal Biology and Conservation Sciences, University of Ghana, Accra, Ghana
- 9. Laboratoire National d'Appui au Dévéloppement Agricole(LANADA)/Laboratoire Central Vétérinaire de Bingerville, Bp : 206 Bingerville, Côte d'Ivoire
- 10. Department of Microbiology, Parasitology and Biotechnology, Sokoine University of Agriculture, Morogoro, Tanzania
- 11. Central Vétérinaire de Diagnostic (LCVD), Conakry, Guinée
- 12. Ecole Inter-Etats des Sciences et Médecine Vétérinaires (EISMV) de Dakar, Sénégal
- 13. Université Polytechnique de Bobo-Dioulasso (UPB), Burkina Faso
- 14. Bill & Melinda Gates Foundation, Seattle, WA, USA
- 15. Clinvet, 1479 Talmadge Hill South, Waverly, NY 14892, USA
- 16. Clinvet, P.O. Box 11186, Universitas, Bloemfontein, 9321 | Uitzich Road, Bainsvlei, Bloemfontein, 9338, South Africa
- 17. Clinglobal, B03/04, The Tamarin Commercial Hub, Jacaranda Avenue, Tamarin, 90903, Mauritius
- 18. Centre for Tropical Livestock Genetics and Health (CTLGH), ILRI Kenya, P.O. Box 30709, Nairobi 00100, Kenya; International Livestock Research Institute, P.O. Box 30709, Nairobi 00100, Nairobi, Kenya
Description
Raw HD data for Riggio et al. 2022: Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle
This repository contains the raw Illumina HD genotypes (i.e., 777,962 SNPs) mapped to the bovine UMD3.1 genome assembly for 3,092 animals from four African countries (namely Burkina Faso, Ghana, Nigeria and Tanzania).