mapping-commons/sssom-py: v0.3.12.dev

• Attempt one to implement superclassOf by @matentzn in https://github.com/mapping-commons/sssom-py/pull/4
• ptable by @cmungall in https://github.com/mapping-commons/sssom-py/pull/8
• Major IO restructure by @matentzn in https://github.com/mapping-commons/sssom-py/pull/7
• test files by @cmungall in https://github.com/mapping-commons/sssom-py/pull/10
• cliques by @cmungall in https://github.com/mapping-commons/sssom-py/pull/9
• Various changes by @matentzn in https://github.com/mapping-commons/sssom-py/pull/11
• adding ability to summarize cliques by @cmungall in https://github.com/mapping-commons/sssom-py/pull/13
• Update cliquesummary.yaml by @matentzn in https://github.com/mapping-commons/sssom-py/pull/14
• Some small fixes to correlations and crosstab by @matentzn in https://github.com/mapping-commons/sssom-py/pull/15
• Add fail when set of unmatched entities is empty by @matentzn in https://github.com/mapping-commons/sssom-py/pull/16
• Making sure context can be read in distro by @matentzn in https://github.com/mapping-commons/sssom-py/pull/18
• Add mapping_cardinality field by @matentzn in https://github.com/mapping-commons/sssom-py/pull/20
• added dosql, diff commands by @cmungall in https://github.com/mapping-commons/sssom-py/pull/26
• Issue31 by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/37
• WIP: random stuff on top of the sparql-util branch by @cmungall in https://github.com/mapping-commons/sssom-py/pull/40
• sparql_util and MappingSetDataFrame by @cmungall in https://github.com/mapping-commons/sssom-py/pull/36
• one remnant mdoc => msdf fixed by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/41
• fixed #42 by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/43
• Some missing msdf returns #44 : MSDoc => MSDF by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/45
• Refactoring parse by @matentzn in https://github.com/mapping-commons/sssom-py/pull/46
• Adding split method by @matentzn in https://github.com/mapping-commons/sssom-py/pull/48
• Cli edit by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/49
• Bump urllib3 from 1.26.4 to 1.26.5 by @dependabot in https://github.com/mapping-commons/sssom-py/pull/54
• Adding mapping set description by @matentzn in https://github.com/mapping-commons/sssom-py/pull/53
• Cli edit by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/50
• Improving obographs parser by @matentzn in https://github.com/mapping-commons/sssom-py/pull/66
• Trying to add mapping_cardinality enum by @matentzn in https://github.com/mapping-commons/sssom-py/pull/52
• fix nl bug by @cmungall in https://github.com/mapping-commons/sssom-py/pull/76
• Issue 56 by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/72
• Apply black and add tox configuration by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/71
• First round of formatting fixes (black) by @matentzn in https://github.com/mapping-commons/sssom-py/pull/84
• Running tests.sh when runniong make test by @matentzn in https://github.com/mapping-commons/sssom-py/pull/86
• Adding "clean prefixes" parameter by @matentzn in https://github.com/mapping-commons/sssom-py/pull/82
• Adding toString method to msdf by @matentzn in https://github.com/mapping-commons/sssom-py/pull/83
• Make QC run on pull requests by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/93
• Migrating to Linkml 1.0.0 by @matentzn in https://github.com/mapping-commons/sssom-py/pull/67
• Update qc.yml by @matentzn in https://github.com/mapping-commons/sssom-py/pull/102
• Input option to argument (click, #100) by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/101
• Bugfix: Missing 'validators' install by @joeflack4 in https://github.com/mapping-commons/sssom-py/pull/104
• OLD Cliquesummary by @matentzn in https://github.com/mapping-commons/sssom-py/pull/94
• accommodating for blank confidence #97 by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/98
• Edit code for filter_out_prefixes in utils.py by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/88
• --input should accept URLs along with local paths by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/103
• Sphinx docs by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/108
• upgrade linkml by @cmungall in https://github.com/mapping-commons/sssom-py/pull/110
• Rerunning linkml pipeline again by @matentzn in https://github.com/mapping-commons/sssom-py/pull/111
• General refactor (renaming, import/export) by @matentzn in https://github.com/mapping-commons/sssom-py/pull/96
• rewire command by @cmungall in https://github.com/mapping-commons/sssom-py/pull/119
• Update installation (redux) by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/114
• Fixing flake8 and black issues by @matentzn in https://github.com/mapping-commons/sssom-py/pull/127
• Keep imports properly sorted with isort by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/128
• Simplify loading data from inside package by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/132
• Add HMS contributor acknowledgement on README by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/131
• Fix RDF bugs by @matentzn in https://github.com/mapping-commons/sssom-py/pull/134
• Add easy flake8 plugins by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/129
• Including contexts as .py files by @matentzn in https://github.com/mapping-commons/sssom-py/pull/135
• Code cleanup by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/142
• include equivalent properties in rewire by @cmungall in https://github.com/mapping-commons/sssom-py/pull/140
• Improve file handling by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/145
• Add rdflib-jsonld module? by @matentzn in https://github.com/mapping-commons/sssom-py/pull/148
• remove unused linkml dependencies by @cmungall in https://github.com/mapping-commons/sssom-py/pull/151
• Add static type checking with MyPy by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/143
• Normalize usage to prefix_map by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/155
• Remove deprecated MetaTSVConverter by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/146
• Continue the descent into Flake8 Hell by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/156
• Flake8 Round 2: We have to go deeper by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/158
• Flake8 Round 3: We're going to make you an overnight celebrity by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/164
• Update external context and Makefile that generates them by @matentzn in https://github.com/mapping-commons/sssom-py/pull/168
• Bump version to 0.3.3 by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/175
• Post-release updates by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/176
• Updating to new SSSOM model by @matentzn in https://github.com/mapping-commons/sssom-py/pull/172
• reverted back to original url by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/178
• Path for sssom.yaml discoverable by other functions through constants.py by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/182
• Add MANIFEST.in for PyPI release #183 by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/184
• Attempt 2 to solve the issue of sssom.yaml not showing in site-packages after pip install by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/185
• Make sure multivalued elements in the model are parsed correctly by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/163
• updated sphinx docs per changes in docstrings by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/166
• Remove url to old documentation by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/192
• Testing, see https://github.com/linkml/linkml/issues/529 by @cmungall in https://github.com/mapping-commons/sssom-py/pull/190
• unpinned rdflib by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/193
• remove jsonasobj dependency by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/194
• Delete docs on design decisions to not confuse users by @cmungall in https://github.com/mapping-commons/sssom-py/pull/187
• Add windows testing and update path construction by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/171
• Merge can now take n inputs #147 by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/195
• make files - refresh sssom by @matentzn in https://github.com/mapping-commons/sssom-py/pull/204
• changed metadata = metadata.prefix_map -> metadata = metadata.metadata by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/206
• Curie detection patch by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/213
• Get dict of schema by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/219
• Add metadata to the results to the dosql function by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/222
• Added sort function and tested! fixes #51 by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/223
• Make --output-directory default to pwd by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/231
• Empty df by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/232
• Empty df by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/233
• Fixing bug with rewire and updating test by @matentzn in https://github.com/mapping-commons/sssom-py/pull/235
• Solves multiple issues by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/234
• Fix bug with default metadata by @matentzn in https://github.com/mapping-commons/sssom-py/pull/238
• Adding mapping predicates to parse() by @matentzn in https://github.com/mapping-commons/sssom-py/pull/236
• Fix all warnings by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/240
• Refactoring prefixmap mode code by @matentzn in https://github.com/mapping-commons/sssom-py/pull/246
• Some fixes to diff command by @matentzn in https://github.com/mapping-commons/sssom-py/pull/248
• Added --version to display version in CLI by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/255
• Improve Documentation by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/249
• Added feature: FHIR ConceptMap JSON converter by @joeflack4 in https://github.com/mapping-commons/sssom-py/pull/250
• upgraded to 310 by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/261
• Implementation of sssom-schema as a package by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/264
• Add inverse_factor handling to ptable by @matentzn in https://github.com/mapping-commons/sssom-py/pull/273
• Enforce LinkML validation in SSSOM by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/270
• GH Action workflow for PyPI release by @hrshdhgd in https://github.com/mapping-commons/sssom-py/pull/277

• @matentzn made their first contribution in https://github.com/mapping-commons/sssom-py/pull/4
• @cmungall made their first contribution in https://github.com/mapping-commons/sssom-py/pull/8
• @hrshdhgd made their first contribution in https://github.com/mapping-commons/sssom-py/pull/37
• @dependabot made their first contribution in https://github.com/mapping-commons/sssom-py/pull/54
• @joeflack4 made their first contribution in https://github.com/mapping-commons/sssom-py/pull/104

Full Changelog: https://github.com/mapping-commons/sssom-py/commits/v0.3.12.dev