Published June 21, 2022
| Version 1.1.0
Dataset
Open
PRJNA578233 gVCFs
Authors/Creators
- 1. University of the Basque Country
- 2. University of Edinburgh
- 3. Beebytes Analytics CIC
- 4. INRAE Toulouse
Description
Sequencing reads were aligned to the Amel_HAv3.1 reference genome using BWA-MEM v0.7.17. Reads were sorted with SAMtools v1.9 and duplicates marked (MarkDuplicates) with GATK v4.0.11.0. Variants for each sample were called using GATK’s HaplotypeCaller with the following non-default parameters --ERC GVCF, --sample-ploidy 1 and -A AlleleFraction. This dataset comprises the gVCF files for samples belonging to project accession: PRJNA578233.
Files
Files
(439.8 MB)
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md5:27ede0eb2a7d485607e61e8eb7457666
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143.7 MB | Download |
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29.0 kB | Download |