Published June 21, 2022
| Version 1.1.0
Dataset
Open
PRJNA363032 gVCFs
Authors/Creators
- 1. University of the Basque Country
- 2. University of Edinburgh
- 3. Beebytes Analytics CIC
- 4. INRAE Toulouse
Description
Sequencing reads were aligned to the Amel_HAv3.1 reference genome using BWA-MEM v0.7.17. Reads were sorted with SAMtools v1.9 and duplicates marked (MarkDuplicates) with GATK v4.0.11.0. Variants for each sample were called using GATK’s HaplotypeCaller with the following non-default parameters --ERC GVCF, --sample-ploidy 1 and -A AlleleFraction. This dataset comprises the gVCF files for samples belonging to project accession: PRJNA363032.
Files
Files
(10.2 GB)
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10.5 kB | Download |
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md5:0137374f009dfc317223aade53160862
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61.4 MB | Download |
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md5:11dc35b3a08a9f8cef6f5ef5b135733a
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8.8 kB | Download |
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md5:c615c06b4b28b1ddf7221d70e3981586
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64.4 MB | Download |
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md5:8ddde07f6c7ef7efbd6b8f084ba0a12e
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9.7 kB | Download |
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md5:573c8202625a9b0cdf42af1df70679f0
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76.6 MB | Download |
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md5:f7de591854579f5ea9932a9820cf63ca
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11.3 kB | Download |
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md5:a45cf12b5e75946835a689d078014a08
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308.1 MB | Download |
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md5:547f4f6c1a31dac67c0bef0eccc5ca98
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32.7 kB | Download |
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md5:142f32071ae283ca022d6c993748f70b
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68.6 MB | Download |
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md5:0bcc0100f7eb0f02cc7bc918f49eee76
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10.7 kB | Download |
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md5:274db7f96746a1f88fd5c95854022178
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70.8 MB | Download |
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md5:be209d68239354eb5d96dfb8e17f9293
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10.2 kB | Download |
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md5:72588b6004c0c47bf2784c8fa6e4f480
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75.1 MB | Download |
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md5:dbbde4ff7185a30e824856dcb81a1807
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11.6 kB | Download |
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md5:dea8b6a1bc9a8a50c6c16220772e0062
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78.0 MB | Download |
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md5:8231766b485a8204f4b400af33cdf982
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11.8 kB | Download |
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md5:98188e44860daecd946dfe74b455c9af
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77.8 MB | Download |
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md5:54b053a6989611f47550bce3c284ba37
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13.9 kB | Download |
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md5:1695482d7dfb5aef2c2447432075a582
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71.1 MB | Download |
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md5:414a20adcf45ebf7ee4b9f26509e725e
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10.9 kB | Download |
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md5:0da2b6304c4882bc00e20923d188257e
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94.5 MB | Download |
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md5:f5a17868e198e5fb9acc040185930312
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15.9 kB | Download |
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md5:0089d14aa11f5180b0b108f4b77d4fcc
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96.9 MB | Download |
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md5:33fb44bc3f050ec8db7925ef1f6ef1b4
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16.3 kB | Download |
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md5:22f51fe9899e78f891955f46f259dad4
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90.6 MB | Download |
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md5:d8d482d271deb3b9f81a6aa4d5bffaa8
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14.9 kB | Download |
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md5:e93dadba57a7ee8a603c5b9ee972765f
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67.8 MB | Download |
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md5:ca7e8d7cfb6d236484adf05588212454
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10.1 kB | Download |
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md5:262bef85790e3418f45598a2c3a92d06
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75.2 MB | Download |
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md5:c8229a51e857c7822dbd3b62045ac656
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10.9 kB | Download |
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md5:bea60db9e5c64d5ffc3019db3faefe7b
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101.8 MB | Download |
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md5:153e702e1588f2cab172c27a31f86bad
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17.6 kB | Download |
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md5:0c4573645f118e818b960fb7caa21b44
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67.4 MB | Download |
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md5:aa6e8830427acf9eeac409418b7ba5e0
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10.0 kB | Download |
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md5:abd1bd8aa054570847672b05f6600671
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72.2 MB | Download |
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md5:7359f3fab9a7d1d9c34f01eb40945069
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10.7 kB | Download |
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md5:16cb6c84d62d07e0aa701e30bd32884d
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82.4 MB | Download |
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md5:496a6be3144c202872d78d62a3b78d91
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12.7 kB | Download |
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md5:07a4a7aeee2bf8e1952b124eceb10662
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83.6 MB | Download |
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md5:6bb5acf6f26d22be861bd5268a421013
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12.3 kB | Download |
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md5:aa5746e477f2bdfce46e9045bd328f00
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67.2 MB | Download |
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md5:d914151892ad4388f13a048fb8d6e6b7
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9.5 kB | Download |
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md5:46d8fbdab917cf70f64ebd46dc761048
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75.3 MB | Download |
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md5:72fb7dea5d78d4721e1b5d58680926dd
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11.2 kB | Download |
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md5:de56a782d285711b6d8b1dde0deaea93
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75.3 MB | Download |
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md5:d92c7ce2ce9bbce91afdbca271f9069e
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11.4 kB | Download |
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md5:c7e9113f7c69c6de1886ddebf1effec9
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64.5 MB | Download |
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md5:e56453b6a5dd158052afb23610db8c16
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9.6 kB | Download |
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md5:81c71b714be003178791ea1201f5b16c
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80.8 MB | Download |
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md5:c44ec14aaf0305272bf773bef9688512
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12.4 kB | Download |