Published June 21, 2022
| Version 1.1.0
Dataset
Open
PRJEB16533 gVCFs
Authors/Creators
- 1. University of the Basque Country
- 2. University of Edinburgh
- 3. Beebytes Analytics CIC
- 4. INRAE Toulouse
Description
Sequencing reads were aligned to the Amel_HAv3.1 reference genome using BWA-MEM v0.7.17. Reads were sorted with SAMtools v1.9 and duplicates marked (MarkDuplicates) with GATK v4.0.11.0. Variants for each sample were called using GATK’s HaplotypeCaller with the following non-default parameters --ERC GVCF, --sample-ploidy 1 and -A AlleleFraction. This dataset comprises the gVCF files for samples belonging to project accession: PRJEB16533.
Files
Files
(14.9 GB)
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97.9 MB | Download |
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md5:60966046b97b3ce23db8dd79b51e7b2f
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16.7 kB | Download |
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md5:769d87d2de317f2df95ee8a1a6e13f78
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112.8 MB | Download |
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md5:7f7eb51590af8188cf26d1937d1f0343
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20.1 kB | Download |
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md5:54e2116748ef333cb9cc08daa1585de3
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102.1 MB | Download |
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md5:1a834af5e186128a140b05dd44c25fb0
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17.8 kB | Download |
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md5:eb5bf694feade20e69d0ee7336694010
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98.8 MB | Download |
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md5:84b0224695edd67091013dc41f4acbb4
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17.0 kB | Download |
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md5:1c99df2711f664bd1570da1b1f61d481
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82.0 MB | Download |
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md5:813b4321e8b2cb888ea744142f27fe9b
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12.4 kB | Download |
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md5:e39be483cb8abce25401b2b56a514c9b
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133.2 MB | Download |
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md5:00e9e931ba9425344b2e2ed7da11ec7b
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25.1 kB | Download |
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md5:e2553a2ed042fd992eeb1a436a5721ec
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114.2 MB | Download |
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md5:2e87eeea347489bd7b9d92f475ac49ff
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21.1 kB | Download |
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md5:c25c2995afe84443a38ae0305b007439
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122.1 MB | Download |
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md5:4bbaf692fd8399bd610a6246957f5f96
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22.4 kB | Download |
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md5:0489d2dfd67aecbf379519ee417337d6
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101.0 MB | Download |
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md5:2d211afc9acde739e7eaec98f730ea91
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17.5 kB | Download |
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md5:859750a956a1302ace3633ec7aa5a9b2
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85.6 MB | Download |
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md5:e24d0688b4a7f4d22b4a3931d8328a10
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14.3 kB | Download |
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md5:37fe9684d293b00ef7eceae65398f113
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87.9 MB | Download |
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md5:fdd48d466ee2cd8db9e53aa92b83b542
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14.5 kB | Download |
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md5:cf4b452ed28fb4e2f9dddaf46798ebda
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159.7 MB | Download |
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md5:2bcf554ff0f2afb2a4b0968be28bbb8d
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28.8 kB | Download |
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md5:e3d5efcb46fcd8ad65892d00b898da0e
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129.3 MB | Download |
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md5:cdb01f8025dcac7d686f731089bf29db
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25.2 kB | Download |
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md5:5a7a0cf792a0e93fa44360f88fdb8fca
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78.7 MB | Download |
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md5:e643197f26c1035f57ec550e4f9eeabe
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12.4 kB | Download |
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md5:0f169ce7056d0fdd6d5f01823a2d449d
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94.4 MB | Download |
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md5:99c9a9a285316bdf27855878e74ec33c
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16.7 kB | Download |
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md5:e87db08f28348b1ff93b72a0346cad56
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85.0 MB | Download |
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md5:ddad2ea1a66f7c10fc731f658d9df00b
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14.1 kB | Download |
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md5:567d5725e3d951962996f537adc1a90c
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88.5 MB | Download |
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md5:509bbd09c09d7cc4a953ac8fd8e7b201
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14.3 kB | Download |
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md5:8b81b9716b925b8fd41d967a6f6dd232
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93.8 MB | Download |
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md5:8e411586b2a720b2bf146f3cd8b3a377
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16.0 kB | Download |
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md5:91ba5a1323fdf27494d223825def6395
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110.0 MB | Download |
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md5:ea1c80208344958182e0217227d34388
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19.7 kB | Download |
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md5:1b61d5763b26e56789580982cd44dadc
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109.0 MB | Download |
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md5:fa7194263dd1137bd3961e9db7546a94
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19.0 kB | Download |