MERRIN: MEtabolic Regulation Rule INference from time series data (Docker image and notebooks)

This record contains notebooks and Docker image for reproducing the results of the paper "MERRIN: MEtabolic Regulation Rule INference from time series data" published as part of the ECCB 2022 conference.

Notebooks can be executed interactively within the Docker image bioasp/merrin:v1 which extends the CoLoMoTo Docker version 2021-02-01.

Also see https://github.com/bioasp/merrin-covert

The Docker image can be executed as follows:

docker pull bioasp/merrin:v1
docker run -it --rm -p 8888:8888 bioasp/merrin:v1

then point your browser to http://127.0.0.1:8888.

The image can be imported using the command docker load with the image file provided in this record:

docker load -i image.tar.gz

or with the donodo command available at https://github.com/pauleve/donodo:

pip install -U donodo
donodo pull 10.5281/zenodo.6670165