Published May 27, 2022
| Version 1.2.0
Workflow
Open
Benchpress
Authors/Creators
Description
# First make sure you are running a Linux OS (required by Singularity) and that Singularity >= 3.2 and Snakemake >= 6.15.0 are installed.
$ mkdir benchpress_120
$ tar -xf benchpress_120.tar.gz -C benchpress_120
$ cd benchpress_120
# To reproduce the small scale study of the paper, using all available cores, type
$ snakemake --cores all --use-singularity --configfile config/paper_er_sem_small.json
# If snakemake is installed in a conda environment called snakemake (as recommended by snakemake) you would have to load it first by
$ conda activate snakemake
Notes
Benchpress is a snakemake workflow for reproducible and scalable execution and benchmarks of structure learning algorithms for probabilistic graphical models.
Files
Files
(10.3 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:9f1197c045c334405ade6e2c73d9b935
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10.3 MB | Download |
Additional details
Related works
- Is derived from
- Software documentation: https://github.com/felixleopoldo/benchpress (URL)
- Is supplemented by
- Preprint: arXiv:2107.03863 (arXiv)