Published May 22, 2022 | Version 1.0.0

Benchmark Datasets for: EGR: Equivariant Graph Refinement and Assessment of 3D Protein Complex Structures

  • 1. University of Missouri-Columbia

Description

This archive contains three benchmark datasets associated with the Equivariant Graph Refiner (EGR), two for protein complex structure refinement (PSR Test and Benchmark 2) and the other for protein complex structure assessment (M4S Test). The refinement datasets contain (1) a `pred` directory that contains decoy structure PDB files and (2) a `true` directory that contains native structure PDB files. The quality assessment dataset contains (1) `target_name` directories that each contain decoy structure PDB files for a given protein target and (2) a `label_info.csv` file listing each decoy structure's DockQ score and CAPRI class label.

Files

Files (259.4 MB)

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md5:a39da0840678de22f6ce535697278045
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