Published May 13, 2022
| Version v1
Dataset
Open
Single-cell datasets for distribution-based sketching
Authors/Creators
Description
Contains preprocessed single-cell data for sketching single-cell samples. Preprocessed adata objects can be accessed using the 'read_h5ad' function in Scanpy.
- The HIV Vaccine Trials Network (HVTN) Flow Cytometry dataset (hvtn_preprocessed.h5ad) was originally downloaded from the Flow Repository under Repository ID FR-FCM-ZZZV (http://flowrepository.org/id/FR-FCM-ZZZV).
- The preeclampsia CyTOF dataset (preeclampsia_preprocessed.h5ad) was originally downloaded from the Flow Repository under Repository ID FR-FCM-ZYRQ (http://flowrepository.org/id/FR-FCM-ZYRQ).
- The NK-Cell CyTOF dataset (nk_cell_preprocessed.h5ad) from Ref. (https://www.nature.com/articles/ncomms14825) was originally downloaded from (https://github.com/eiriniar/CellCnn).
- The multiple sclerosis (MS) single-cell RNA sequencing dataset of peripheral blood samples (ms_preprocessed.h5ad) from Ref. (https://www.nature.com/articles/s41467-019-14118-w) was originally accessed from the Gene Expression Omnibus using the accession code GSE138266 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE138266).