Published January 31, 2023 | Version v1

The impact of secondary channels on the wetting properties of interconnected hydrophobic nanopores

  • 1. Sapienza Univeristy of Rome
  • 2. Centre for Cooperative Research on Alternative Energies (CIC energiGUNE), Basque Research and Technology Alliance (BRTA), Spain; Institute of Chemistry, University of Silesia in Katowice, Poland
  • 3. Dipartimento di Scienze chimiche, farmaceutiche ed agrarie, Università degli Studi di Ferrara, Italy

Description

Data from Molecular Dynamics simulations.

Files ending in .xyz are trajectory files and relate to total or partical simulation trajectories. The normal sintax is eqX.xyz where X is the imposed filling of the main cavity.  

Files ending in .dat are the "measurement" files and are the files required to compute the free energy from the simulation data. The normal sintax is eqX.dat where X is the imposed filling of the main cavity.  

Files ending in .data are LAMMPS output files. The normal sintax is eqX.data where X is the imposed filling of the main cavity. 

Other auxiliary files exist, but they are part of the analysis of the data and can be reconstructed with just the above mentioned files.

The simulation data for specific configurations of the system is separated in different zipped files (either .tar.gz or .zip). 2A.tar.gz, 4A.tar.gz, 6A.tar.gz, 10.zip and 12.zip correspond to the configurations of lateral channels corresponding to 0.2, 0.4, 0.6,1 and 1.2 nm respectively. empty.zip and no.zip correspond to the configurations where the lateral channels where forcefully left empty (by evacuating the 6 lateral pores) and to the simple cylindrical pore with no lateral channels. all.zip, edges.zip and middle.zip correspond to the configurations of cavities with water molecules on all channel sites, only the external rings and in the middle ring, as described in the supplementary note 7.

Files

10A.zip

Files (10.3 GB)

Name Size
md5:6e7b5cbe89e8a8dfae7bc19299acd72d
1.7 GB Preview Download
md5:5d723a4d1724fd81c62fde6614328222
2.3 GB Preview Download
md5:04484740f7cf57262c4be7a5f16bd8bb
3.0 GB Download
md5:79cbea0f3a433169a1267838c0c26185
461.6 MB Download
md5:15f6684dca6321037c148f11772755c4
463.7 MB Download
md5:f0e8450840abb84ca2944bdb3549784b
336.7 MB Preview Download
md5:43f5f2afb30c73f28b29f1bcbacc30be
741.4 MB Preview Download
md5:3fdad73b148987771b88db95b9fc0a04
360.4 MB Preview Download
md5:90d5fb265748c32924fd67760e0df549
94.0 MB Preview Download
md5:4b1e037b4d40a83d154a31056699df57
725.7 MB Preview Download
md5:68ed405545d5a93f631e99e8c28729d3
162.0 MB Preview Download

Additional details

Funding

European Commission
HyGate - Hydrophobic Gating in nanochannels: understanding single channel mechanisms for designing better nanoscale sensors 803213