Published May 4, 2022 | Version v1
Journal article Open

Bionano Solve outputs (PT2) for: Optical mapping compendium of structural variants across global cattle breeds

Authors/Creators

  • 1. The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, United Kingdom
  • 2. The International Livestock Research Institute, PO Box 30709, Nairobi, Kenya
  • 3. Ribeirão Preto College of Nursing, University of Sao Paulo, Ribeirão Preto, SP, Brazil
  • 4. Institute of Animal Science, Agriculture Department of São Paulo Government, Sertãozinho, SP, 14.174-000, Brazil
  • 5. Ribeirão Preto School of Medicine, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
  • 6. Department of Veterinary Pathology and Microbiology, University of Nigeria, Nsukka. Enugu State, Nigeria
  • 7. Biotechnology Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria.
  • 8. School of Biosecurity, Biotechnology and Laboratory Sciences (SBLS), College of Veterinary Medicine, Animal Resources and Biosecurity, Makerere University, P.O Box 7062, Kampala, Uganda
  • 9. Department of Disease Control, School of Veterinary Medicine, University of Zambia, P.O BOX 32379, Lusaka, Zambia
  • 10. Department of Laboratory and Diagnostics, Livestock Services Cooperative Society, P.O. BOX 32025, Lusaka, Zambia
  • 11. Department of Veterinary Services, Ministry of Fisheries and Livestock, Central Veterinary Research Institute, P.O. Box 33980, Lusaka, Zambia
  • 12. Royal (Dick) School of Veterinary Studies, University of Edinburgh, Roslin, UK

Description

Bionano solve pipeline output for 8 cattle of 4 different breeds (Holstein-Friesian, N'Dama, White Fulani, Nelore) described in Talenti et al. The output can be imported in the Bionano Access software to visualize, filter and export the SVs.

Files

chunk2.zip

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Additional details

Funding

UK Research and Innovation
Prediction of genes and regulatory elements in farm animal genomes BBS/E/D/10002070
UK Research and Innovation
GCRF-BBR: A compendium of structural variation across African cattle breeds BB/R015155/1