Published May 3, 2022 | Version v1
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CView: tutorial 2 - obtaining variants (script only)

Creators

  • 1. CIBIO/InBIO

Description

Obtaining Variants

This page contains a PDF based tutorial that outlines the approaches that can be used to identify variants using CView. Further details about the software can be obtained from our manuscript CView: A network based tool for enhanced alignment visualization.

 

Other Tutorials

A general demonstration of CView usage in the form of an mp4 movie is available here.

 

Case Study Data

The alignment used for the case study described within the manuscript is available here.

 

A poster sumarization presented at ISMB 2022 is available here.

The CView project page is located at: https://sourceforge.net/projects/cview/. 

 

Related software to this project are:
1. CStone 
2. CSReadGen
3. CView <
4. ChimSim
5. TVScript

 

General details of the project are available here.

 

| linkedIn . web . orcid |
| linheiro . web . orcid |---| sabatino . web . orcid |---| lobo . web . orcid |---| archer . web . orcid |

 

Notes

This work was funded by the project NORTE-01-0246-FEDER-000063, supported by Norte Portugal Regional Operational Programme (NORTE2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF), and by research funding from the project under the references PTDC/BIA-EVF/29115/2017 and POCI-01-0145-FEDER-029115 co-funded by Operational Competitiveness and Internationalization Program, Portugal 2020 and the European Union via the European Regional Development Fund (ERDF), and by National Funds through FCT. DL was supported by FCT through a PhD grant with the reference PD/BD/132403/2017. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. FCT URL: https://www.fct.pt/.

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tutorial_2_obtaining_variants.pdf

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