Published May 1, 2022 | Version v1

Imipenem hydrolysis by the L1 and the NDM-1 metallo-beta-lactamases: QM/MM structures of the stationary points

  • 1. Lomonosov Moscow State University
  • 2. Federal Federal Research Centre "Fundamentals of Biotechnology" of the Russian Academy of Sciences

Description

Stationary points (transition states and minima) for the hydrolysis reactions of the imipenem in the active sites of the L1 and NDM-1 metallo-beta-lactamases. The reactions occure in three elementary steps each. For the NDM-1 there are two compeeting pathways leading to the different products. Enamine and imine forms of the hydrolyzed imipenem may form and those are marked with "N" and "C", respectively, according to the atom being protonated at the last step. Structures are calculated at the QM(PBE0-D3/6-31G**)/MM(AMBER) level.

Files

Files (10.0 MB)

Name Size Download all
md5:4c7d31462e3c6041702ee0cfb3bf552a
662.1 kB Download
md5:9db4f42f57dd1db5cf1ea23149dc2cfa
662.1 kB Download
md5:3bfc3bf2a306fb74fc9f0f56b98b11a4
662.1 kB Download
md5:2fe8eacb8b28a97c091239024e7b7b5c
662.1 kB Download
md5:104e11d668ee70835c0f92559ee33d08
662.1 kB Download
md5:d7aceaaddb6f9f58e3462e8d6f5ed2b5
662.1 kB Download
md5:cbd01e82494977ac2152da2e06f7b40c
662.1 kB Download
md5:8e9c4567770b603c19051f27bdb06dfa
594.2 kB Download
md5:059e7b988bf3e1b2f41633ae9745b857
594.2 kB Download
md5:0de99db41edcef77f7a7b4e9ef89f8aa
594.2 kB Download
md5:23eaa952f05f7213d170786e48a2cf67
594.2 kB Download
md5:dc38bb9888481a884176c074d52b50b9
594.2 kB Download
md5:6a5e19f094e7869738954cff52682133
594.2 kB Download
md5:40ad04c4a81bdcbf8dfa820f8a0e0319
594.2 kB Download
md5:2aaa83a7a9a4e7498ca7a8df84ad88c5
594.2 kB Download
md5:5ba7c2e9dd6ab093383dadef1d3684e7
594.2 kB Download