Journal article Open Access

MSnbase, Efficient and Elegant R-Based Processing and Visualization of Raw Mass Spectrometry Data

Gatto, Laurent; Gibb, Sebastian; Rainer, Johannes

We present version 2 of the MSnbase R/Bioconductor package. MSnbase provides infrastructure for the manipulation, processing and visualisation of mass spectrometry data. We focus on the new on-disk infrastructure, that allows the handling of large raw mass spectrometry experiments on commodity hardware and illustrate how the package is used for elegant data processing, method development, and visualisation.
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