Dimerization of the Pulmonary Surfactant Protein C in a Membrane Environment
Creators
- 1. University of Helsinki
- 2. University of Helsinki, Heidelberg University Biochemistry Center
- 3. Department of Biochemistry and Molecular Biology, Faculty of Biology, and Research Institute "Hospital 12 de Octubre (imas12)"
Description
Cluster centroid structures, also shown in Figure 4 in the main paper:
- Cluster 1: cluster_1.pdb
- Cluster 2: cluster_2.pdb
- Cluster 3: cluster_3.pdb
Starting structures for the atomistic simulations:
- Cluster 1:
- Repeat 1: atomistic_cluster_1_repeat_1.pdb
- Repeat 2: atomistic_cluster_1_repeat_2.pdb
- Repeat 3: atomistic_cluster_1_repeat_3.pdb
- Cluster 2:
- Repeat 1: atomistic_cluster_2_repeat_1.pdb
- Repeat 2: atomistic_cluster_2_repeat_2.pdb
- Repeat 3: atomistic_cluster_2_repeat_3.pdb
- Cluster 3:
- Repeat 1: atomistic_cluster_3_repeat_1.pdb
- Repeat 2: atomistic_cluster_3_repeat_2.pdb
- Repeat 3: atomistic_cluster_3_repeat_3.pdb
These structures are fine-grained from the high-ranking members for the clusters obtained from the coarse-grained biased simulations.
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Additional details
Funding
- Finnish Centre of Excellence in Biomembrane Research: From Lipid-Protein Interactions to Functions 307415
- Academy of Finland