Large-scale annotation dataset for cell/tissue segmentation in H&E-stained images : anti-CD3/CD20 (lymphocytes)

LICENSE

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC-BY-NC-SA 4.0)

For non-commercial use, please use the dataset under CC-BY-NC-SA.
If you would like to use the dataset for commercial purposes, please contact us (ishum-prm@m.u-tokyo.ac.jp).

A Tar.gz file contains the following files:

- HE image file: {antigen}_{celltype}_{slideID}_{posx}_{posy}_HE.png

- Mask image file: {antigen}_{celltype}_{slideID}_{posx}_{posy}_mask.png

Each image file is 984x984 px.

posX and posY are the leftmost position in WSI coordinate.

Mask files store binary segmentation mask (background : 0, target : 1)

A csv file contains the following information:

antigen : Antibodies for this antigen were used to create the segmentation mask.

filename: filename of image or mask file.

train_val_test : train, validation, or test sample in the paper.