Real-time Alignments for Predicting Decision-Making Time for Diagnostics over NGS Cycles

Input datasets for an interpretable learning approach to predict decision-making time for diagnostics over NGS cycles. The dataset contains alignment files of two clinical sputum samples sequenced with an Illumina MiSeq sequencing device, and following a real-time sequencing protocol.

The datasets consist of real-time alignment files for specific sequencing cycle intervals. The alignment has been performed to a database of respiratory microbes. Data preprocessing, including the removal of human host DNA, is integrated into the real-time alignment approach that has been applied to generate the alignments.