Dataset Open Access

CeNGEN Integrated mRNA data and bulk noncoding RNA lookup table

Barrett, Alec; Varol, Erdem; Weinreb, Alexis; Taylor, Seth R.; McWhirter, Rebecca; Cros, Cyril; Basavaraju, Manasa; Poff, Abigail; Tipps, John A.; Majeed, Maryam; Vidal, Berta; Wang, Chen; Yemini, Eviatar; Bayer, Emily A.; Sun, HaoSheng; Hobert, Oliver; Miller, David M.; Hammarlund, Marc

This CeNGEN web tool provides a user interface to datasets described in Barrett et al(1): http://bulk.cengen.org:3838/Bulk_Integrated_viz/. It can also be run as an Rshiny app locally using the attached files.

Raw data are being processed at GEO, and this resource will be updated with the accession number when available.

(1)Integrating bulk and single cell RNA-seq refines transcriptomic profiles of specific C. elegans neurons. Alec Barrett, Erdem Varol, Alexis Weinreb, Seth R. Taylor, Rebecca McWhirter, CyrilCros, Manasa Basavaraju, Abigail Poff, John A. Tipps, Maryam Majeed, Berta Vidal, Chen Wang, Eviatar Yemini, Emily A. Bayer, HaoSheng Sun, Oliver Hobert, David M.Miller III, Marc Hammarlund. bioRxiv 2022.04.05.487209; doi: https://doi.org/10.1101/2022.04.05.487209

 

Files (73.7 MB)
Name Size
app.R
md5:80a20535cec9c40f2b3b82e55a31c35b 		2.5 kB Download
Long_form_integrated_GeTMM_table_040822.tsv
md5:37acfde14dd0f89be97272be0ac0cf04 		49.5 MB Download
Long_form_tables_forAlexis.zip
md5:67dc60f5bfbe36f40ae84c9cfeb8879b 		24.2 MB Download
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Publication date:
April 8, 2022
DOI:
10.5281/zenodo.6426323

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