Published April 8, 2022 | Version v1

Cellxgene VIP snRNA-seq demo dataset for visualization and DE analysis

Authors/Creators

  • 1. Biogen
  • 2. BioinfoRx

Description

H5ad file can be used as demo input for Cellxgene VIP. Dataset was the re-process from Schirmer et al Nature 2019 paper by using the raw fastq files. In order to reproduce the h5ad file, details could be found in https://github.com/interactivereport/cellxgene_VIP/blob/master/notebook/MS_Nature_Rowitch_snRNAseq.ipynb 
Two rds files are also included here which are the input files for sample differential expression (DE) analysis scripts (glmmTMB and Nebula)

Files

Files (1.0 GB)

Name Size
md5:1d73f661654a4a1170372f94c110a61b
216.9 MB Download
md5:6254035449f1e216467e7d531f7c6286
3.3 MB Download
md5:a0bfa85d2aa418afdbf9da8477a67dca
810.2 MB Download

Additional details

Related works

Is published in
Journal article: 10.1101/2020.08.28.270652 (DOI)