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Supplementary information for 'Distinct gene expression dynamics in developing and regenerating crustacean limbs', by Sinigaglia et al.

Chiara Sinigaglia; Alba Almazán; Marie Lebel; Marie Sémon; Benjamin Gillet; Sandrine Hughes; Eric Edsinger; Michalis Averof; Mathilde Paris

Supplementary data and code for the manuscript 'Distinct gene expression dynamics in developing and regenerating crustacean limbs', by Sinigaglia et al.

Research supported by the European Union Horizon 2020 programme, grant ERC-2015-AdG #694918
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Dataset_S11_moltingdataset_tpm_8clusters_w-orthology_v3.csv
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Dataset_S12_molting_8clusters_0.2sd_centers_samplereorg_v2.csv
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Dataset_S16_List_20k_varEDR.txt
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Dataset_S17_jags_mfuzz_R_8cl_w-orthology_v4.csv
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Dataset_S18_jags_mfuzz_R_37cl_w-orthology_v4.csv
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Dataset_S19_jags_mfuzz_E_4cl_w-orthology_v2.csv
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Dataset_S1_Annotation_Reg_Embryo_500_cleanOverlap0.5_3.gtf.zip
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Dataset_S1_Annotation_Reg_Embryo_500_cleanOverlap0.5_3.txt
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Dataset_S20_jags_mfuzz_E_32cl_w-orthology_v2.csv
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Dataset_S21_jags_mfuzz_D_4cl_w-orthology_v3.csv
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Dataset_S22_jags_mfuzz_D_12cl_w-orthology_v3.csv
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Dataset_S23_jags_mfuzz_R_8cl_0.2sd_centers_v3.csv
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Dataset_S24_jags_mfuzz_R_37cl_0.2sd_centers_v3.csv
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Dataset_S25_jags_mfuzz_E_4cl_centres_v2.csv
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Dataset_S26_jags_mfuzz_E_32cl_centres_v2.csv
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Dataset_S27_jags_mfuzz_D_4cl_centre_v3.csv
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Dataset_S28_jags_mfuzz_D_12cl_centre_v3.csv
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Dataset_S29_Orthology_table_Phaw_vs_Dmel_Hsap_v5.csv
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Dataset_S2_Annotation_Reg_Embryo_500_flag_Fragmentation_Dmel_Duplication_PacBio_v4.csv
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Dataset_S30_Transcriptional_regulators_MoltingCycle_v2.csv
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Dataset_S31_ph-pacbio-sequel2-isoseq3-css99.fasta.zip
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Dataset_S3_70_samples_abundance_gene_est_counts_Fragment_candidates_from_Dmel_and_Pacbio_hits_added.csv
md5:17f071081e6f2f868d8bda99d63fcfeb 		20.6 MB Download
Dataset_S4_70_samples_abundance_gene_tpm_Fragment_candidates_from_Dmel_and_Pacbio_hits_added_v2.csv
md5:6f406560cf1dea53a147929256887e3e 		24.2 MB Download
Dataset_S5_DESeq2_EmbryoEf_vs_time_genelist_pj0001_w-orthology_v2.csv
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Dataset_S6_DESeq2_EmbryoEd_vs_time_genelist_pj0001_w-orthology_v2.csv
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Dataset_S7_122_samples_abundance_gene_est_counts_Fragment_candidates_from_Dmel_and_Pacbio_hits_added_v2.txt
md5:f95fe4ae655be887e7a4b6c6ebad56bc 		37.8 MB Download
Dataset_S8_122_samples_abundance_gene_tpm_Fragment_candidates_from_Dmel_and_Pacbio_hits_added_v2.txt
md5:c96d3145b2cb8a86eab78bd2b6067cd2 		48.1 MB Download
Dataset_S9_20_samples_abundance_gene_est_counts_Fragment_candidates_from_Dmel_and_Pacbio_hits_added_v3.csv
md5:b9061bb594baa7739cb6a51108619a23 		6.8 MB Download
DESeq2_lresO_molt.gz
md5:ea675493e5684b2a90149e74e5aa4cf9 		44.4 MB Download
R_data_Sinigaglia_Embryo_reg_05042022-20220407T075816Z.zip
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Publication date:
January 27, 2022
DOI:
10.5281/zenodo.6420694

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Keyword(s):
leg development regeneration transcriptional profiling (RNAseq) crustaceans Parhyale hawaiensis
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Creative Commons Attribution 4.0 International

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Version 4 10.5281/zenodo.6420694 Jan 27, 2022
Version 3 10.5281/zenodo.6420682 Jan 27, 2022
Version 2 10.5281/zenodo.6420666 Jan 27, 2022
Version 1 10.5281/zenodo.5910293 Jan 27, 2022
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