Software Open Access
ChemChaste1.0
Connah G. M. Johnson;
Alexander G. Fletcher;
Orkun S Soyer
ChemChaste is a computational tool for the spatial simulation of multicellular and bulk biochemistry. It can simulate an arbitrary number of diffusing chemicals with spatially heterogeneous diffusion coefficients. It can simulate cells within a spatial domain and having their own intracellular reactions that can be linked to the environmental domain. ChemChaste uses a file-based interface to define the simulation / model parameters. Description of ChemChaste is currently available in a pre-print at https://doi.org/10.1101/2021.10.21.465304.
Files
(5.5 MB)
| Name | Size | |
|---|---|---|
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ChemChaste-main-2.zip
md5:6a2fab46b92df5cf0e2da1dc9d3fb2ba |
5.5 MB | Download |
51
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downloads
| All versions | This version | |
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| Views | 51 | 51 |
| Downloads | 1 | 1 |
| Data volume | 5.5 MB | 5.5 MB |
| Unique views | 43 | 43 |
| Unique downloads | 1 | 1 |
Indexed in
- Publication date:
- March 31, 2022
- DOI:
-
- Keyword(s):
- Systems biology, spatial simulation, microbial ecology, cell metabolism
- Grants:
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Research Councils UK:
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18-BBSRC-NSF/BIO - Understanding the origin and evolution of metabolic interactions using synthetic microbial communities (BB/T010150/1)
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EPSRC and MRC Centre for Doctoral Training in Mathematics for Real-World Systems (EP/L015374/1)
- How do the atypical cadherins Fat and Dachsous integrate growth and patterning during development? (BB/R016925/1)
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18-BBSRC-NSF/BIO - Understanding the origin and evolution of metabolic interactions using synthetic microbial communities (BB/T010150/1)
- License (for files):
- BSD licenses (New and Simplified)