PHIRI - WP6 - Use Case D scripts for local analyses (R Markdown)

The PHIRI Federated Research Infrastructure (FRI) is supported by a containerized reproducible solution for data analysis to be deployed on-premises by each participant partner (a.k.a PHIRI-app).

This solution is based on the identification of the relevant data sources for each cases study (including the demonstration pilot), the development of the common data models and the analytical pipelines, and enables the FAIR reporting of the rapid cycle outputs.

The R Markdown script is provided, integrated within the PHIRI-app, for PHIRI Use Case D local analyses. 

Here, the R Markdown script is provided with:

a) synthetic dataset build following the specifications from the Use Case D Common Data Model, 

b) instructions on where to find the synthetic dataset within the Use Case D Common Data Model description (HTML), and

c) an HTML interactive report produced by performing the analyses proposed within the R Markdown using the synthetic dataset above. 

These elements are provided to facilitate collaboration on testing and improving the Use Case D analytical pipeline within the scope of PHIRI WP6. 

If you wish to contribute to the development of the PHIRI - Use Case D analysis, please contact the WP6 Coordinator through the PHIRI website.