Published March 17, 2022 | Version v1

MD simulation of POPC bilayer with OPLS3e force field, 500 mM NaCl part 2

Authors/Creators

Description

MD simulation of POPC bilayer with OPLS3e force field, 500 mM NaCl part 2

Dataset contains trajectories (_trj) for the last 500ns of the 1000ns trajectory, topology (-out.cms) and other files.

For the ease of the upload, trajectory files (_trj) are divided to 100ns pieces and tarred (named desmond_md_nacl500_x-xns.tar.gz)

System: POPC bilayer in water

Number of lipids: 200 (100/leaflet)

Number of waters: 8880

Salt: NaCl

Concentration: 500 mM

Number of cations: 80

Simulation time: 1000 ns (in this dataset 500-1000ns of original trajectories)

Simulation engine: Desmond 2019-4

Temperature: 300 K

Related dataset: MD simulation of POPC bilayer with OPLS3e force field, 500 mM NaCl part 1

Files

Files (29.8 GB)

Name Size
md5:bb0317a2908754888c156325541cc1fd
8.1 kB Download
md5:87d9d889163c959881c339b960c293ed
15.6 MB Download
md5:4bd2a8d2e09032a1489637cf9513d7ba
23.3 MB Download
md5:b6fb32c48c7c4f27fa7e559472000d09
68.3 MB Download
md5:3382cb86cc6ee56c29146db985542d09
5.9 GB Download
md5:9a4233632a45aea16bd2ad5f70a01056
5.9 GB Download
md5:8a49eab133f21a73925f8de6451d2052
5.9 GB Download
md5:d16b0cdfb9057fb9917db14225df8b73
5.9 GB Download
md5:95b61be7b03427984236fc62e12fb8f1
15.6 MB Download
md5:d5d62d9891cfe702c97d8365a04bb645
5.9 GB Download

Additional details

Related works

Compiles
Preprint: 10.26434/chemrxiv-2022-m89bg (DOI)