MD simulation of POPC bilayer with OPLS3e force field, 500 mM NaCl part 1
Authors/Creators
Description
MD simulation of POPC (1-palmitoyl-2-oleoyl-phosphatidylcholine) bilayer with OPLS3e force field, 500 mM NaCl part 1 (0-500ns)
Dataset contains trajectories (_trj) for the first 500ns of the 1000ns trajectory, topology (-out.cms), input files (.cfg, .msj, .cms), and other files
For the ease of the upload, trajectory files (_trj) are divided to 100ns pieces and tarred (named desmond_md_nacl500_x-xns.tar.gz)
Dataset also contains Gromacs converted files (.xtc, .gro and .top)
System: POPC bilayer in water
Number of lipids: 200 (100/leaflet)
Number of waters: 8880
Salt: NaCl
Concentration: 500 mM
Number of cations: 80
Simulation time: 1000 ns (in this dataset 0-500ns of original trajectories)
Simulation engine: Desmond 2019-4
Temperature: 300 K
Related dataset: MD simulation of POPC bilayer with OPLS3e force field, 500 mM NaCl part 2
In contrast to previous version, this version contains gromacs format trajectory file .xtc with corrected time steps.
Files
Files
(47.8 GB)
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md5:804859bd367e27e238c574190cea87a9
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md5:090daa4e2a98657575e793574d51becf
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5.9 GB | Download |
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md5:107945229286db9d5ab0ddeae5ac849f
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5.9 GB | Download |
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md5:b4b469bb895c3ce5687b134fb033b07e
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md5:41b64ef707b33b6e677002c2e7b4f93d
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5.9 GB | Download |
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md5:a5848a2545c4a6dc1968dfc7b1b0e387
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3.7 MB | Download |
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md5:d3e70ee34788a01c355af4597612c158
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md5:fb28107006f304802b9d08367fa91194
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Additional details
Related works
- Compiles
- Preprint: 10.26434/chemrxiv-2022-m89bg (DOI)
- Is published in
- Publication: 10.1021/acs.jcim.2c00395 (DOI)
Dates
- Available
-
2022