Published March 16, 2022 | Version v2

MD simulation of POPC bilayer with OPLS3e force field, 100 mM NaCl part 2

Authors/Creators

Description

MD simulation of POPC bilayer with OPLS3e force field, 100 mM NaCl part 2 (500-1000ns)

Dataset contains trajectories (_trj) for the last 500ns of the 1000ns trajectory, topology (-out.cms), and other files

For the ease of the upload, trajectory files (_trj) are divided to 100ns pieces and tarred (named desmond_md_nacl100_x-xns.tar.gz)

Dataset also contains Gromacs converted trajectory (.xtc) for the last 500 ns of 1000 ns trajectory

System: POPC bilayer in water

Number of lipids: 200 (100/leaflet)

Number of waters: 8880

Concentration: 100 mM

Number of cations: 16

Simulation time: 1000 ns (in this dataset 500-1000ns)

Simulation engine: Desmond 2019-4

Temperature: 300 K

Related dataset: MD simulation of POPC bilayer with OPLS3e force field, 100 mM NaCl part 1

Files

Files (39.7 GB)

Name Size
md5:a820f11e159c68102c918929c6b55d20
1.3 MB Download
md5:a3ffeedacffa9fd19dddcd8d7a244d07
8.1 kB Download
md5:31ae9860bf914818948d59ab0cae8675
15.5 MB Download
md5:6cc798a58472ffa35eec3c25008ae56e
23.3 MB Download
md5:e5cd560632b86db4fe00b8a687c86452
68.3 MB Download
md5:0c3f3611265bbcd09531a5abcef3ea13
5.9 GB Download
md5:ec5b524afe17117981365cbc6d6058af
5.9 GB Download
md5:08b41b17cd43dd1b4512d4678854bf97
5.9 GB Download
md5:59e1ef7aba10a4ca84c5d5f38808bc31
5.9 GB Download
md5:70c79ed16a688162e3beae20de1fde31
15.5 MB Download
md5:25d3a0f25638497cecc40a0b96a19711
5.9 GB Download
md5:d56a9dd704c447c82fca2beea8359d7a
10.0 GB Download

Additional details

Related works

Compiles
Preprint: 10.26434/chemrxiv-2022-m89bg (DOI)