Published March 11, 2022 | Version v1

MD simulation of POPC bilayer with OPLS3e force field, 100 mM CaCl2 part 2

Authors/Creators

Description

MD simulation of POPC bilayer with OPLS3e force field, 100 mM CaCl2 part 2 (500-1000ns)

Dataset contains trajectories (_trj) for the last 500ns of the 1000ns trajectory, topology (-out.cms) and other files.

For the ease of the upload, trajectory files (_trj) are divided to 100ns pieces and tarred (named desmond_md_cacl100_x-xns.tar.gz)

System: POPC bilayer in water

Number of lipids: 200 (100/leaflet)

Number of waters: 8880

Salt: CaCl2

Concentration: 100 mM

Number of cations: 16

Simulation time: 1000 ns (in this dataset 500-1000ns)

Simulation engine: Desmond 2019-4

Temperature: 300 K

Related dataset: MD simulation of POPC bilayer with OPLS3e force field, 100 mM CaCl2 part 1

Files

Files (29.7 GB)

Name Size
md5:cf6d0d261b3057b915dc8dae6ba445a6
8.1 kB Download
md5:908074d439839a3455fbb40a5a914ff2
15.5 MB Download
md5:3c1250c6d5d199ba3e42a2d482da86dd
23.3 MB Download
md5:f82379d86bb4c6158122e0b96620a52f
68.3 MB Download
md5:49500cd7c5ce88b8e7aabdd253950a11
5.9 GB Download
md5:91348aabc45088b4f6d17225d651fddf
5.9 GB Download
md5:173b7906d12089b52195b3d4169de13a
5.9 GB Download
md5:6ee6c101a75f2a26f9064f35b1b4ab02
5.9 GB Download
md5:8f87673cce2e84425d061f71162f7baf
15.5 MB Download
md5:c39a9397f642098d0f59f7f3729d17d9
5.9 GB Download

Additional details

Related works

Compiles
Preprint: 10.26434/chemrxiv-2022-m89bg (DOI)